Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0182 and EX28DRAFT_0183 are separated by 16 nucleotides EX28DRAFT_0183 and EX28DRAFT_0184 are separated by 109 nucleotides EX28DRAFT_0184 and EX28DRAFT_0185 are separated by 120 nucleotides
EX28DRAFT_0182: EX28DRAFT_0182 - 4-hydroxy-tetrahydrodipicolinate synthase, at 131,566 to 132,444
_0182
EX28DRAFT_0183: EX28DRAFT_0183 - Uncharacterized lipoprotein, at 132,461 to 133,495
_0183
EX28DRAFT_0184: EX28DRAFT_0184 - phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6), at 133,605 to 134,318
_0184
EX28DRAFT_0185: EX28DRAFT_0185 - Predicted metalloprotease, at 134,439 to 135,308
_0185
Position (kb) 132
133
134 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.479 kb on + strand at 131.480 kb on - strand at 131.480 kb on - strand at 131.480 kb on - strand at 131.480 kb on - strand at 131.480 kb on - strand at 132.517 kb on + strand at 132.653 kb on + strand, within EX28DRAFT_0183 at 132.653 kb on + strand, within EX28DRAFT_0183 at 132.655 kb on + strand, within EX28DRAFT_0183 at 132.658 kb on + strand, within EX28DRAFT_0183 at 132.658 kb on + strand, within EX28DRAFT_0183 at 132.845 kb on + strand, within EX28DRAFT_0183 at 132.846 kb on - strand, within EX28DRAFT_0183 at 132.988 kb on + strand, within EX28DRAFT_0183 at 132.988 kb on + strand, within EX28DRAFT_0183 at 133.149 kb on + strand, within EX28DRAFT_0183 at 133.298 kb on + strand, within EX28DRAFT_0183 at 133.298 kb on + strand, within EX28DRAFT_0183 at 133.367 kb on + strand, within EX28DRAFT_0183 at 133.367 kb on + strand, within EX28DRAFT_0183 at 133.367 kb on + strand, within EX28DRAFT_0183 at 133.367 kb on + strand, within EX28DRAFT_0183 at 133.368 kb on - strand, within EX28DRAFT_0183 at 134.361 kb on - strand at 134.378 kb on + strand at 134.407 kb on - strand at 134.407 kb on - strand at 134.410 kb on + strand at 134.410 kb on + strand at 134.411 kb on - strand at 134.411 kb on - strand at 134.415 kb on + strand at 134.415 kb on + strand at 134.415 kb on + strand at 134.415 kb on + strand at 134.415 kb on + strand at 134.473 kb on + strand at 134.473 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 131,479 + +0.7 131,479 + -1.2 131,479 + +0.1 131,479 + +2.8 131,479 + -0.9 131,479 + -0.8 131,479 + -2.5 131,479 + -0.8 131,479 + -1.1 131,480 - -1.7 131,480 - -0.9 131,480 - -1.1 131,480 - -0.6 131,480 - -2.4 132,517 + -0.3 132,653 + EX28DRAFT_0183 0.19 -2.2 132,653 + EX28DRAFT_0183 0.19 +0.4 132,655 + EX28DRAFT_0183 0.19 +0.7 132,658 + EX28DRAFT_0183 0.19 +2.7 132,658 + EX28DRAFT_0183 0.19 -1.0 132,845 + EX28DRAFT_0183 0.37 -2.0 132,846 - EX28DRAFT_0183 0.37 +0.0 132,988 + EX28DRAFT_0183 0.51 +0.1 132,988 + EX28DRAFT_0183 0.51 -1.6 133,149 + EX28DRAFT_0183 0.66 +1.7 133,298 + EX28DRAFT_0183 0.81 +0.2 133,298 + EX28DRAFT_0183 0.81 +0.3 133,367 + EX28DRAFT_0183 0.88 +0.5 133,367 + EX28DRAFT_0183 0.88 +3.5 133,367 + EX28DRAFT_0183 0.88 +4.8 133,367 + EX28DRAFT_0183 0.88 +0.7 133,368 - EX28DRAFT_0183 0.88 +0.7 134,361 - +0.9 134,378 + -0.3 134,407 - -1.1 134,407 - +0.9 134,410 + -0.2 134,410 + -0.0 134,411 - -1.9 134,411 - +1.2 134,415 + +0.0 134,415 + -0.8 134,415 + -1.4 134,415 + -1.1 134,415 + +2.1 134,473 + +0.0 134,473 + -0.7
Or see this region's nucleotide sequence