Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0150 and EX28DRAFT_0151 are separated by 48 nucleotides EX28DRAFT_0151 and EX28DRAFT_0152 are separated by 11 nucleotides
EX28DRAFT_0150: EX28DRAFT_0150 - ABC-type sugar transport system, periplasmic component, at 95,864 to 96,793
_0150
EX28DRAFT_0151: EX28DRAFT_0151 - ABC-type sugar transport system, ATPase component, at 96,842 to 98,389
_0151
EX28DRAFT_0152: EX28DRAFT_0152 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 98,401 to 99,429
_0152
Position (kb) 96
97
98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 95.845 kb on + strand at 95.859 kb on + strand at 95.859 kb on + strand at 95.859 kb on + strand at 95.859 kb on + strand at 95.859 kb on + strand at 95.859 kb on + strand at 95.860 kb on - strand at 95.860 kb on - strand at 95.860 kb on - strand at 95.944 kb on + strand at 96.107 kb on - strand, within EX28DRAFT_0150 at 96.239 kb on + strand, within EX28DRAFT_0150 at 96.239 kb on + strand, within EX28DRAFT_0150 at 96.239 kb on + strand, within EX28DRAFT_0150 at 96.240 kb on - strand, within EX28DRAFT_0150 at 96.385 kb on + strand, within EX28DRAFT_0150 at 96.385 kb on + strand, within EX28DRAFT_0150 at 96.389 kb on + strand, within EX28DRAFT_0150 at 96.509 kb on - strand, within EX28DRAFT_0150 at 96.791 kb on + strand at 96.791 kb on + strand at 96.791 kb on + strand at 96.791 kb on + strand at 96.791 kb on + strand at 96.791 kb on + strand at 96.791 kb on + strand at 96.791 kb on + strand at 96.791 kb on + strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.792 kb on - strand at 96.794 kb on + strand at 96.794 kb on + strand at 97.100 kb on + strand, within EX28DRAFT_0151 at 97.100 kb on + strand, within EX28DRAFT_0151 at 97.101 kb on - strand, within EX28DRAFT_0151 at 97.230 kb on - strand, within EX28DRAFT_0151 at 97.408 kb on + strand, within EX28DRAFT_0151 at 97.430 kb on - strand, within EX28DRAFT_0151 at 97.434 kb on - strand, within EX28DRAFT_0151 at 97.434 kb on - strand, within EX28DRAFT_0151 at 97.725 kb on + strand, within EX28DRAFT_0151 at 97.726 kb on - strand, within EX28DRAFT_0151 at 97.726 kb on - strand, within EX28DRAFT_0151 at 97.796 kb on - strand, within EX28DRAFT_0151 at 97.850 kb on + strand, within EX28DRAFT_0151 at 98.556 kb on + strand, within EX28DRAFT_0152 at 98.587 kb on + strand, within EX28DRAFT_0152 at 98.686 kb on + strand, within EX28DRAFT_0152 at 98.964 kb on + strand, within EX28DRAFT_0152 at 98.965 kb on - strand, within EX28DRAFT_0152 at 98.970 kb on + strand, within EX28DRAFT_0152 at 99.044 kb on - strand, within EX28DRAFT_0152 at 99.116 kb on - strand, within EX28DRAFT_0152 at 99.344 kb on - strand at 99.346 kb on + strand at 99.369 kb on - strand at 99.369 kb on - strand at 99.369 kb on - strand at 99.373 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 95,845 + -0.8 95,859 + -0.3 95,859 + +0.1 95,859 + -0.2 95,859 + -0.2 95,859 + -0.1 95,859 + -1.1 95,860 - -0.2 95,860 - -1.2 95,860 - -0.9 95,944 + -0.6 96,107 - EX28DRAFT_0150 0.26 +0.8 96,239 + EX28DRAFT_0150 0.40 -0.4 96,239 + EX28DRAFT_0150 0.40 -0.1 96,239 + EX28DRAFT_0150 0.40 -0.7 96,240 - EX28DRAFT_0150 0.40 +0.0 96,385 + EX28DRAFT_0150 0.56 +0.0 96,385 + EX28DRAFT_0150 0.56 +0.2 96,389 + EX28DRAFT_0150 0.56 +0.2 96,509 - EX28DRAFT_0150 0.69 +2.3 96,791 + -1.2 96,791 + +0.2 96,791 + +5.4 96,791 + +0.5 96,791 + -1.7 96,791 + +5.5 96,791 + +0.4 96,791 + +0.0 96,791 + +0.3 96,792 - -1.6 96,792 - -0.3 96,792 - +1.1 96,792 - -1.1 96,792 - -2.7 96,792 - -2.2 96,792 - -2.4 96,792 - -0.3 96,792 - +0.4 96,794 + +0.4 96,794 + +0.6 97,100 + EX28DRAFT_0151 0.17 -1.0 97,100 + EX28DRAFT_0151 0.17 -0.8 97,101 - EX28DRAFT_0151 0.17 -0.2 97,230 - EX28DRAFT_0151 0.25 -0.5 97,408 + EX28DRAFT_0151 0.37 -2.4 97,430 - EX28DRAFT_0151 0.38 -0.5 97,434 - EX28DRAFT_0151 0.38 -0.3 97,434 - EX28DRAFT_0151 0.38 +1.2 97,725 + EX28DRAFT_0151 0.57 -0.2 97,726 - EX28DRAFT_0151 0.57 +1.5 97,726 - EX28DRAFT_0151 0.57 -0.8 97,796 - EX28DRAFT_0151 0.62 -0.4 97,850 + EX28DRAFT_0151 0.65 +1.0 98,556 + EX28DRAFT_0152 0.15 -2.1 98,587 + EX28DRAFT_0152 0.18 -0.6 98,686 + EX28DRAFT_0152 0.28 -0.3 98,964 + EX28DRAFT_0152 0.55 -0.8 98,965 - EX28DRAFT_0152 0.55 -0.3 98,970 + EX28DRAFT_0152 0.55 -0.4 99,044 - EX28DRAFT_0152 0.62 -0.3 99,116 - EX28DRAFT_0152 0.69 +1.9 99,344 - -1.5 99,346 + -2.1 99,369 - -0.3 99,369 - -0.8 99,369 - -3.2 99,373 - +0.4
Or see this region's nucleotide sequence