Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0088 and EX28DRAFT_0089 are separated by 24 nucleotides EX28DRAFT_0089 and EX28DRAFT_0090 overlap by 113 nucleotides EX28DRAFT_0090 and EX28DRAFT_0091 are separated by 135 nucleotides EX28DRAFT_0091 and EX28DRAFT_0092 are separated by 30 nucleotides
EX28DRAFT_0088: EX28DRAFT_0088 - haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB, at 27,487 to 28,122
_0088
EX28DRAFT_0089: EX28DRAFT_0089 - Cytosine/adenosine deaminases, at 28,147 to 28,686
_0089
EX28DRAFT_0090: EX28DRAFT_0090 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 28,574 to 30,124
_0090
EX28DRAFT_0091: EX28DRAFT_0091 - hypothetical protein, at 30,260 to 30,361
_0091
EX28DRAFT_0092: EX28DRAFT_0092 - phosphoribosylformylglycinamidine synthase, single chain form, at 30,392 to 34,279
_0092
Position (kb) 28
29
30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 27.621 kb on - strand, within EX28DRAFT_0088 at 27.696 kb on + strand, within EX28DRAFT_0088 at 27.696 kb on + strand, within EX28DRAFT_0088 at 27.696 kb on + strand, within EX28DRAFT_0088 at 27.696 kb on + strand, within EX28DRAFT_0088 at 27.697 kb on - strand, within EX28DRAFT_0088 at 27.805 kb on + strand, within EX28DRAFT_0088 at 28.120 kb on + strand at 28.131 kb on - strand at 28.131 kb on - strand at 28.143 kb on + strand at 28.144 kb on - strand at 28.144 kb on - strand at 28.146 kb on - strand at 28.785 kb on + strand, within EX28DRAFT_0090 at 28.806 kb on + strand, within EX28DRAFT_0090 at 28.807 kb on - strand, within EX28DRAFT_0090 at 28.813 kb on - strand, within EX28DRAFT_0090 at 28.839 kb on + strand, within EX28DRAFT_0090 at 28.853 kb on - strand, within EX28DRAFT_0090 at 28.853 kb on - strand, within EX28DRAFT_0090 at 28.854 kb on + strand, within EX28DRAFT_0090 at 28.855 kb on - strand, within EX28DRAFT_0090 at 28.855 kb on - strand, within EX28DRAFT_0090 at 28.915 kb on + strand, within EX28DRAFT_0090 at 28.955 kb on - strand, within EX28DRAFT_0090 at 28.974 kb on + strand, within EX28DRAFT_0090 at 29.038 kb on + strand, within EX28DRAFT_0090 at 29.039 kb on - strand, within EX28DRAFT_0090 at 29.050 kb on - strand, within EX28DRAFT_0090 at 29.331 kb on + strand, within EX28DRAFT_0090 at 29.356 kb on + strand, within EX28DRAFT_0090 at 29.529 kb on + strand, within EX28DRAFT_0090 at 29.530 kb on - strand, within EX28DRAFT_0090 at 29.683 kb on + strand, within EX28DRAFT_0090 at 29.749 kb on - strand, within EX28DRAFT_0090 at 29.751 kb on + strand, within EX28DRAFT_0090 at 29.752 kb on - strand, within EX28DRAFT_0090 at 29.769 kb on + strand, within EX28DRAFT_0090 at 29.791 kb on + strand, within EX28DRAFT_0090 at 29.793 kb on + strand, within EX28DRAFT_0090 at 29.793 kb on + strand, within EX28DRAFT_0090 at 29.794 kb on - strand, within EX28DRAFT_0090 at 29.794 kb on - strand, within EX28DRAFT_0090 at 29.858 kb on - strand, within EX28DRAFT_0090 at 30.084 kb on - strand at 30.174 kb on + strand at 30.239 kb on + strand at 30.258 kb on + strand at 30.259 kb on - strand at 30.325 kb on + strand, within EX28DRAFT_0091 at 30.500 kb on + strand at 31.011 kb on - strand, within EX28DRAFT_0092
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 27,621 - EX28DRAFT_0088 0.21 -0.9 27,696 + EX28DRAFT_0088 0.33 +1.2 27,696 + EX28DRAFT_0088 0.33 +0.8 27,696 + EX28DRAFT_0088 0.33 +1.1 27,696 + EX28DRAFT_0088 0.33 +1.7 27,697 - EX28DRAFT_0088 0.33 +0.3 27,805 + EX28DRAFT_0088 0.50 -0.1 28,120 + +0.9 28,131 - +0.6 28,131 - -0.5 28,143 + -0.5 28,144 - +0.2 28,144 - -0.7 28,146 - +0.8 28,785 + EX28DRAFT_0090 0.14 +0.3 28,806 + EX28DRAFT_0090 0.15 -0.4 28,807 - EX28DRAFT_0090 0.15 -0.1 28,813 - EX28DRAFT_0090 0.15 +0.4 28,839 + EX28DRAFT_0090 0.17 -0.2 28,853 - EX28DRAFT_0090 0.18 -0.8 28,853 - EX28DRAFT_0090 0.18 +0.1 28,854 + EX28DRAFT_0090 0.18 +2.7 28,855 - EX28DRAFT_0090 0.18 +0.9 28,855 - EX28DRAFT_0090 0.18 +0.4 28,915 + EX28DRAFT_0090 0.22 +0.4 28,955 - EX28DRAFT_0090 0.25 -1.4 28,974 + EX28DRAFT_0090 0.26 +0.6 29,038 + EX28DRAFT_0090 0.30 +2.0 29,039 - EX28DRAFT_0090 0.30 -0.4 29,050 - EX28DRAFT_0090 0.31 +0.6 29,331 + EX28DRAFT_0090 0.49 -1.4 29,356 + EX28DRAFT_0090 0.50 -1.2 29,529 + EX28DRAFT_0090 0.62 -0.3 29,530 - EX28DRAFT_0090 0.62 +0.7 29,683 + EX28DRAFT_0090 0.72 +0.1 29,749 - EX28DRAFT_0090 0.76 +1.8 29,751 + EX28DRAFT_0090 0.76 +0.7 29,752 - EX28DRAFT_0090 0.76 -0.9 29,769 + EX28DRAFT_0090 0.77 -0.3 29,791 + EX28DRAFT_0090 0.78 -0.2 29,793 + EX28DRAFT_0090 0.79 -2.9 29,793 + EX28DRAFT_0090 0.79 +0.1 29,794 - EX28DRAFT_0090 0.79 -2.7 29,794 - EX28DRAFT_0090 0.79 +0.0 29,858 - EX28DRAFT_0090 0.83 +0.5 30,084 - +0.0 30,174 + +0.9 30,239 + -1.3 30,258 + -0.8 30,259 - +0.2 30,325 + EX28DRAFT_0091 0.64 -1.7 30,500 + -1.5 31,011 - EX28DRAFT_0092 0.16 -1.5
Or see this region's nucleotide sequence