Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16815

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16805 and ABIE41_RS16810 are separated by 18 nucleotidesABIE41_RS16810 and ABIE41_RS16815 are separated by 15 nucleotidesABIE41_RS16815 and ABIE41_RS16820 are separated by 121 nucleotidesABIE41_RS16820 and ABIE41_RS16825 are separated by 79 nucleotidesABIE41_RS16825 and ABIE41_RS16830 are separated by 41 nucleotides ABIE41_RS16805: ABIE41_RS16805 - CinA family protein, at 3,465,598 to 3,466,089 _RS16805 ABIE41_RS16810: ABIE41_RS16810 - type II toxin-antitoxin system RatA family toxin, at 3,466,108 to 3,466,587 _RS16810 ABIE41_RS16815: ABIE41_RS16815 - lipoyl synthase, at 3,466,603 to 3,467,628 _RS16815 ABIE41_RS16820: ABIE41_RS16820 - GlsB/YeaQ/YmgE family stress response membrane protein, at 3,467,750 to 3,468,028 _RS16820 ABIE41_RS16825: ABIE41_RS16825 - GlsB/YeaQ/YmgE family stress response membrane protein, at 3,468,108 to 3,468,446 _RS16825 ABIE41_RS16830: ABIE41_RS16830 - hypothetical protein, at 3,468,488 to 3,469,258 _RS16830 Position (kb) 3466 3467 3468Strain fitness (log2 ratio) -2 -1 0 1at 3465.763 kb on + strand, within ABIE41_RS16805at 3465.763 kb on + strand, within ABIE41_RS16805at 3465.764 kb on - strand, within ABIE41_RS16805at 3466.149 kb on - strandat 3466.250 kb on + strand, within ABIE41_RS16810at 3466.250 kb on + strand, within ABIE41_RS16810at 3466.251 kb on - strand, within ABIE41_RS16810at 3466.251 kb on - strand, within ABIE41_RS16810at 3466.337 kb on + strand, within ABIE41_RS16810at 3466.338 kb on - strand, within ABIE41_RS16810at 3466.338 kb on - strand, within ABIE41_RS16810at 3466.338 kb on - strand, within ABIE41_RS16810at 3466.338 kb on - strand, within ABIE41_RS16810at 3466.410 kb on - strand, within ABIE41_RS16810at 3466.508 kb on + strand, within ABIE41_RS16810at 3466.509 kb on - strand, within ABIE41_RS16810at 3467.739 kb on + strandat 3467.992 kb on - strand, within ABIE41_RS16820at 3468.609 kb on + strand, within ABIE41_RS16830at 3468.609 kb on + strand, within ABIE41_RS16830at 3468.610 kb on - strand, within ABIE41_RS16830

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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3,465,763 + ABIE41_RS16805 0.34 -0.0
3,465,763 + ABIE41_RS16805 0.34 -1.5
3,465,764 - ABIE41_RS16805 0.34 -2.2
3,466,149 - -0.6
3,466,250 + ABIE41_RS16810 0.30 +1.2
3,466,250 + ABIE41_RS16810 0.30 -0.9
3,466,251 - ABIE41_RS16810 0.30 -0.8
3,466,251 - ABIE41_RS16810 0.30 -0.1
3,466,337 + ABIE41_RS16810 0.48 -1.0
3,466,338 - ABIE41_RS16810 0.48 -0.9
3,466,338 - ABIE41_RS16810 0.48 -0.4
3,466,338 - ABIE41_RS16810 0.48 -0.8
3,466,338 - ABIE41_RS16810 0.48 -0.4
3,466,410 - ABIE41_RS16810 0.63 +1.0
3,466,508 + ABIE41_RS16810 0.83 +1.0
3,466,509 - ABIE41_RS16810 0.84 -0.1
3,467,739 + -0.4
3,467,992 - ABIE41_RS16820 0.87 -0.3
3,468,609 + ABIE41_RS16830 0.16 -0.0
3,468,609 + ABIE41_RS16830 0.16 +0.1
3,468,610 - ABIE41_RS16830 0.16 +1.2

Or see this region's nucleotide sequence