Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS08135 and ABIE41_RS08140 are separated by 57 nucleotides ABIE41_RS08140 and ABIE41_RS08145 are separated by 115 nucleotides
ABIE41_RS08135: ABIE41_RS08135 - class I SAM-dependent methyltransferase, at 1,682,743 to 1,683,459
_RS08135
ABIE41_RS08140: ABIE41_RS08140 - serine/threonine dehydratase, at 1,683,517 to 1,685,223
_RS08140
ABIE41_RS08145: ABIE41_RS08145 - CoA ester lyase, at 1,685,339 to 1,686,214
_RS08145
Position (kb) 1683
1684
1685
1686 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1682.606 kb on + strand at 1682.831 kb on + strand, within ABIE41_RS08135 at 1682.832 kb on - strand, within ABIE41_RS08135 at 1682.832 kb on - strand, within ABIE41_RS08135 at 1682.945 kb on + strand, within ABIE41_RS08135 at 1682.945 kb on + strand, within ABIE41_RS08135 at 1682.946 kb on - strand, within ABIE41_RS08135 at 1682.963 kb on + strand, within ABIE41_RS08135 at 1682.963 kb on + strand, within ABIE41_RS08135 at 1682.980 kb on + strand, within ABIE41_RS08135 at 1682.980 kb on + strand, within ABIE41_RS08135 at 1682.981 kb on - strand, within ABIE41_RS08135 at 1683.603 kb on - strand at 1684.094 kb on + strand, within ABIE41_RS08140 at 1684.094 kb on + strand, within ABIE41_RS08140 at 1684.094 kb on + strand, within ABIE41_RS08140 at 1684.094 kb on + strand, within ABIE41_RS08140 at 1684.094 kb on + strand, within ABIE41_RS08140 at 1684.095 kb on - strand, within ABIE41_RS08140 at 1684.212 kb on - strand, within ABIE41_RS08140 at 1684.525 kb on + strand, within ABIE41_RS08140 at 1684.526 kb on - strand, within ABIE41_RS08140 at 1684.526 kb on - strand, within ABIE41_RS08140 at 1684.537 kb on - strand, within ABIE41_RS08140 at 1685.281 kb on - strand at 1685.281 kb on - strand at 1685.372 kb on + strand at 1685.372 kb on + strand at 1685.372 kb on + strand at 1685.372 kb on + strand at 1685.372 kb on + strand at 1685.372 kb on + strand at 1685.372 kb on + strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.373 kb on - strand at 1685.443 kb on + strand, within ABIE41_RS08145 at 1685.520 kb on - strand, within ABIE41_RS08145 at 1685.560 kb on + strand, within ABIE41_RS08145 at 1685.927 kb on + strand, within ABIE41_RS08145 at 1685.927 kb on + strand, within ABIE41_RS08145 at 1685.928 kb on - strand, within ABIE41_RS08145
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 1,682,606 + +0.3 1,682,831 + ABIE41_RS08135 0.12 -1.9 1,682,832 - ABIE41_RS08135 0.12 +0.6 1,682,832 - ABIE41_RS08135 0.12 -0.4 1,682,945 + ABIE41_RS08135 0.28 +0.5 1,682,945 + ABIE41_RS08135 0.28 -0.5 1,682,946 - ABIE41_RS08135 0.28 +0.6 1,682,963 + ABIE41_RS08135 0.31 -0.9 1,682,963 + ABIE41_RS08135 0.31 +0.3 1,682,980 + ABIE41_RS08135 0.33 +0.7 1,682,980 + ABIE41_RS08135 0.33 +1.6 1,682,981 - ABIE41_RS08135 0.33 -0.1 1,683,603 - +0.1 1,684,094 + ABIE41_RS08140 0.34 +1.3 1,684,094 + ABIE41_RS08140 0.34 -0.7 1,684,094 + ABIE41_RS08140 0.34 +0.5 1,684,094 + ABIE41_RS08140 0.34 -0.5 1,684,094 + ABIE41_RS08140 0.34 +1.9 1,684,095 - ABIE41_RS08140 0.34 +1.9 1,684,212 - ABIE41_RS08140 0.41 -0.2 1,684,525 + ABIE41_RS08140 0.59 +1.6 1,684,526 - ABIE41_RS08140 0.59 -2.0 1,684,526 - ABIE41_RS08140 0.59 +0.0 1,684,537 - ABIE41_RS08140 0.60 +0.0 1,685,281 - +1.9 1,685,281 - -0.1 1,685,372 + -0.0 1,685,372 + -0.4 1,685,372 + +0.1 1,685,372 + +1.9 1,685,372 + -0.4 1,685,372 + +0.4 1,685,372 + -0.6 1,685,373 - +0.9 1,685,373 - +0.5 1,685,373 - -0.2 1,685,373 - +1.9 1,685,373 - +0.5 1,685,373 - +1.1 1,685,373 - -1.4 1,685,373 - -2.1 1,685,373 - +0.6 1,685,373 - -1.1 1,685,443 + ABIE41_RS08145 0.12 -0.6 1,685,520 - ABIE41_RS08145 0.21 +1.9 1,685,560 + ABIE41_RS08145 0.25 -0.3 1,685,927 + ABIE41_RS08145 0.67 -0.3 1,685,927 + ABIE41_RS08145 0.67 -0.8 1,685,928 - ABIE41_RS08145 0.67 -1.5
Or see this region's nucleotide sequence