Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04145 and ABIE41_RS04150 are separated by 118 nucleotides ABIE41_RS04150 and ABIE41_RS04155 are separated by 33 nucleotides
ABIE41_RS04145: ABIE41_RS04145 - methyl-accepting chemotaxis protein, at 856,040 to 857,782
_RS04145
ABIE41_RS04150: ABIE41_RS04150 - methyl-accepting chemotaxis protein, at 857,901 to 860,255
_RS04150
ABIE41_RS04155: ABIE41_RS04155 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 860,289 to 862,727
_RS04155
Position (kb) 857
858
859
860
861 Strain fitness (log2 ratio) -1
0
1
2
3 at 856.990 kb on + strand, within ABIE41_RS04145 at 856.991 kb on - strand, within ABIE41_RS04145 at 856.991 kb on - strand, within ABIE41_RS04145 at 857.800 kb on - strand at 857.824 kb on + strand at 857.824 kb on + strand at 857.825 kb on - strand at 857.825 kb on - strand at 857.825 kb on - strand at 857.825 kb on - strand at 857.825 kb on - strand at 857.825 kb on - strand at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.162 kb on + strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.163 kb on - strand, within ABIE41_RS04150 at 858.273 kb on + strand, within ABIE41_RS04150 at 858.360 kb on - strand, within ABIE41_RS04150 at 858.495 kb on + strand, within ABIE41_RS04150 at 858.495 kb on + strand, within ABIE41_RS04150 at 858.496 kb on - strand, within ABIE41_RS04150 at 859.414 kb on - strand, within ABIE41_RS04150
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 856,990 + ABIE41_RS04145 0.55 +0.3 856,991 - ABIE41_RS04145 0.55 +2.0 856,991 - ABIE41_RS04145 0.55 +0.7 857,800 - +0.0 857,824 + +0.4 857,824 + +0.7 857,825 - -0.3 857,825 - +0.5 857,825 - +0.6 857,825 - +0.4 857,825 - +0.3 857,825 - +1.5 858,162 + ABIE41_RS04150 0.11 -0.2 858,162 + ABIE41_RS04150 0.11 +0.0 858,162 + ABIE41_RS04150 0.11 +1.8 858,162 + ABIE41_RS04150 0.11 +1.0 858,162 + ABIE41_RS04150 0.11 +0.6 858,162 + ABIE41_RS04150 0.11 -0.0 858,162 + ABIE41_RS04150 0.11 -0.3 858,162 + ABIE41_RS04150 0.11 -0.2 858,162 + ABIE41_RS04150 0.11 -0.0 858,162 + ABIE41_RS04150 0.11 -0.6 858,163 - ABIE41_RS04150 0.11 -0.0 858,163 - ABIE41_RS04150 0.11 +0.6 858,163 - ABIE41_RS04150 0.11 +0.3 858,163 - ABIE41_RS04150 0.11 -0.0 858,163 - ABIE41_RS04150 0.11 +0.0 858,163 - ABIE41_RS04150 0.11 -1.5 858,163 - ABIE41_RS04150 0.11 +0.1 858,163 - ABIE41_RS04150 0.11 +1.3 858,163 - ABIE41_RS04150 0.11 -1.7 858,163 - ABIE41_RS04150 0.11 +0.1 858,163 - ABIE41_RS04150 0.11 -0.7 858,163 - ABIE41_RS04150 0.11 +0.8 858,273 + ABIE41_RS04150 0.16 -1.5 858,360 - ABIE41_RS04150 0.19 +3.3 858,495 + ABIE41_RS04150 0.25 +0.4 858,495 + ABIE41_RS04150 0.25 -0.9 858,496 - ABIE41_RS04150 0.25 -0.3 859,414 - ABIE41_RS04150 0.64 -0.8
Or see this region's nucleotide sequence