Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS03760 and ABIE41_RS03765 overlap by 4 nucleotides ABIE41_RS03765 and ABIE41_RS03770 overlap by 4 nucleotides ABIE41_RS03770 and ABIE41_RS03775 are separated by 82 nucleotides ABIE41_RS03775 and ABIE41_RS03780 are separated by 10 nucleotides
ABIE41_RS03760: ABIE41_RS03760 - protocatechuate 3,4-dioxygenase subunit beta, at 785,103 to 785,813
_RS03760
ABIE41_RS03765: ABIE41_RS03765 - CoA-transferase subunit beta, at 785,810 to 786,583
_RS03765
ABIE41_RS03770: ABIE41_RS03770 - CoA transferase subunit A, at 786,580 to 787,437
_RS03770
ABIE41_RS03775: ABIE41_RS03775 - IclR family transcriptional regulator C-terminal domain-containing protein, at 787,520 to 788,287
_RS03775
ABIE41_RS03780: ABIE41_RS03780 - hypothetical protein, at 788,298 to 789,191
_RS03780
Position (kb) 786
787
788 Strain fitness (log2 ratio) -2
-1
0
1
2 at 785.663 kb on + strand, within ABIE41_RS03760 at 785.715 kb on + strand, within ABIE41_RS03760 at 785.765 kb on + strand at 785.800 kb on + strand at 785.800 kb on + strand at 785.801 kb on - strand at 786.129 kb on - strand, within ABIE41_RS03765 at 786.231 kb on + strand, within ABIE41_RS03765 at 786.232 kb on - strand, within ABIE41_RS03765 at 786.232 kb on - strand, within ABIE41_RS03765 at 786.435 kb on + strand, within ABIE41_RS03765 at 786.436 kb on - strand, within ABIE41_RS03765 at 786.436 kb on - strand, within ABIE41_RS03765 at 786.436 kb on - strand, within ABIE41_RS03765 at 786.436 kb on - strand, within ABIE41_RS03765 at 786.705 kb on - strand, within ABIE41_RS03770 at 786.705 kb on - strand, within ABIE41_RS03770 at 786.705 kb on - strand, within ABIE41_RS03770 at 786.725 kb on + strand, within ABIE41_RS03770 at 786.725 kb on + strand, within ABIE41_RS03770 at 786.725 kb on + strand, within ABIE41_RS03770 at 786.725 kb on + strand, within ABIE41_RS03770 at 786.725 kb on + strand, within ABIE41_RS03770 at 786.725 kb on + strand, within ABIE41_RS03770 at 786.726 kb on - strand, within ABIE41_RS03770 at 786.726 kb on - strand, within ABIE41_RS03770 at 786.726 kb on - strand, within ABIE41_RS03770 at 786.726 kb on - strand, within ABIE41_RS03770 at 786.726 kb on - strand, within ABIE41_RS03770 at 786.728 kb on + strand, within ABIE41_RS03770 at 786.728 kb on + strand, within ABIE41_RS03770 at 786.728 kb on + strand, within ABIE41_RS03770 at 787.003 kb on - strand, within ABIE41_RS03770 at 787.005 kb on - strand, within ABIE41_RS03770 at 787.005 kb on - strand, within ABIE41_RS03770 at 787.062 kb on - strand, within ABIE41_RS03770 at 787.107 kb on - strand, within ABIE41_RS03770 at 787.268 kb on + strand, within ABIE41_RS03770 at 787.268 kb on + strand, within ABIE41_RS03770 at 787.268 kb on + strand, within ABIE41_RS03770 at 787.268 kb on + strand, within ABIE41_RS03770 at 787.269 kb on - strand, within ABIE41_RS03770 at 787.359 kb on + strand at 787.483 kb on - strand at 787.549 kb on + strand at 787.549 kb on + strand at 787.550 kb on - strand at 787.550 kb on - strand at 787.695 kb on - strand, within ABIE41_RS03775 at 787.695 kb on - strand, within ABIE41_RS03775 at 787.721 kb on - strand, within ABIE41_RS03775 at 787.868 kb on + strand, within ABIE41_RS03775 at 787.868 kb on + strand, within ABIE41_RS03775 at 787.868 kb on + strand, within ABIE41_RS03775 at 787.868 kb on + strand, within ABIE41_RS03775 at 787.869 kb on - strand, within ABIE41_RS03775 at 788.026 kb on - strand, within ABIE41_RS03775 at 788.094 kb on - strand, within ABIE41_RS03775
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 785,663 + ABIE41_RS03760 0.79 +0.6 785,715 + ABIE41_RS03760 0.86 -0.2 785,765 + +0.4 785,800 + +0.7 785,800 + +0.8 785,801 - -0.3 786,129 - ABIE41_RS03765 0.41 +0.6 786,231 + ABIE41_RS03765 0.54 -0.3 786,232 - ABIE41_RS03765 0.55 -0.1 786,232 - ABIE41_RS03765 0.55 +0.5 786,435 + ABIE41_RS03765 0.81 +1.0 786,436 - ABIE41_RS03765 0.81 +1.2 786,436 - ABIE41_RS03765 0.81 +0.8 786,436 - ABIE41_RS03765 0.81 +0.7 786,436 - ABIE41_RS03765 0.81 -0.3 786,705 - ABIE41_RS03770 0.15 -0.3 786,705 - ABIE41_RS03770 0.15 +0.1 786,705 - ABIE41_RS03770 0.15 +0.1 786,725 + ABIE41_RS03770 0.17 +1.1 786,725 + ABIE41_RS03770 0.17 -2.5 786,725 + ABIE41_RS03770 0.17 +1.7 786,725 + ABIE41_RS03770 0.17 +0.4 786,725 + ABIE41_RS03770 0.17 +0.8 786,725 + ABIE41_RS03770 0.17 -1.2 786,726 - ABIE41_RS03770 0.17 +0.7 786,726 - ABIE41_RS03770 0.17 -0.3 786,726 - ABIE41_RS03770 0.17 +1.1 786,726 - ABIE41_RS03770 0.17 +0.7 786,726 - ABIE41_RS03770 0.17 -0.3 786,728 + ABIE41_RS03770 0.17 +1.2 786,728 + ABIE41_RS03770 0.17 -2.4 786,728 + ABIE41_RS03770 0.17 -1.8 787,003 - ABIE41_RS03770 0.49 +0.7 787,005 - ABIE41_RS03770 0.50 +0.3 787,005 - ABIE41_RS03770 0.50 -1.3 787,062 - ABIE41_RS03770 0.56 +0.3 787,107 - ABIE41_RS03770 0.61 -0.3 787,268 + ABIE41_RS03770 0.80 +0.4 787,268 + ABIE41_RS03770 0.80 -1.6 787,268 + ABIE41_RS03770 0.80 -1.1 787,268 + ABIE41_RS03770 0.80 +2.3 787,269 - ABIE41_RS03770 0.80 +0.3 787,359 + +0.4 787,483 - -0.8 787,549 + -0.7 787,549 + -1.4 787,550 - -0.1 787,550 - -1.8 787,695 - ABIE41_RS03775 0.23 +0.1 787,695 - ABIE41_RS03775 0.23 -1.7 787,721 - ABIE41_RS03775 0.26 -0.5 787,868 + ABIE41_RS03775 0.45 +0.3 787,868 + ABIE41_RS03775 0.45 +1.2 787,868 + ABIE41_RS03775 0.45 +0.9 787,868 + ABIE41_RS03775 0.45 +1.8 787,869 - ABIE41_RS03775 0.45 -0.8 788,026 - ABIE41_RS03775 0.66 -1.5 788,094 - ABIE41_RS03775 0.75 +1.0
Or see this region's nucleotide sequence