Strain Fitness in Bosea sp. OAE506 around ABIE41_RS00055

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS00045 and ABIE41_RS00050 are separated by 37 nucleotidesABIE41_RS00050 and ABIE41_RS00055 are separated by 82 nucleotidesABIE41_RS00055 and ABIE41_RS00060 are separated by 13 nucleotidesABIE41_RS00060 and ABIE41_RS00065 are separated by 46 nucleotidesABIE41_RS00065 and ABIE41_RS00070 overlap by 4 nucleotidesABIE41_RS00070 and ABIE41_RS00075 are separated by 53 nucleotides ABIE41_RS00045: ABIE41_RS00045 - DUF1330 domain-containing protein, at 7,376 to 7,663 _RS00045 ABIE41_RS00050: ABIE41_RS00050 - orotidine-5'-phosphate decarboxylase, at 7,701 to 8,408 _RS00050 ABIE41_RS00055: ABIE41_RS00055 - DsbA family oxidoreductase, at 8,491 to 9,135 _RS00055 ABIE41_RS00060: ABIE41_RS00060 - type II toxin-antitoxin system VapC family toxin, at 9,149 to 9,313 _RS00060 ABIE41_RS00065: ABIE41_RS00065 - type II toxin-antitoxin system VapC family toxin, at 9,360 to 9,536 _RS00065 ABIE41_RS00070: ABIE41_RS00070 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 9,533 to 9,778 _RS00070 ABIE41_RS00075: ABIE41_RS00075 - lysine-2,3-aminomutase-like protein, at 9,832 to 10,899 _RS00075 Position (kb) 8 9 10Strain fitness (log2 ratio) -2 -1 0 1 2at 7.573 kb on + strand, within ABIE41_RS00045at 7.573 kb on + strand, within ABIE41_RS00045at 7.573 kb on + strand, within ABIE41_RS00045at 7.574 kb on - strand, within ABIE41_RS00045at 7.574 kb on - strand, within ABIE41_RS00045at 7.603 kb on - strand, within ABIE41_RS00045at 7.650 kb on + strandat 7.650 kb on + strandat 7.650 kb on + strandat 7.651 kb on - strandat 7.651 kb on - strandat 7.703 kb on - strandat 7.889 kb on + strand, within ABIE41_RS00050at 7.889 kb on + strand, within ABIE41_RS00050at 7.889 kb on + strand, within ABIE41_RS00050at 7.890 kb on - strand, within ABIE41_RS00050at 7.890 kb on - strand, within ABIE41_RS00050at 7.890 kb on - strand, within ABIE41_RS00050at 8.012 kb on - strand, within ABIE41_RS00050at 8.041 kb on + strand, within ABIE41_RS00050at 8.041 kb on + strand, within ABIE41_RS00050at 8.041 kb on + strand, within ABIE41_RS00050at 8.042 kb on - strand, within ABIE41_RS00050at 8.042 kb on - strand, within ABIE41_RS00050at 8.296 kb on + strand, within ABIE41_RS00050at 8.296 kb on + strand, within ABIE41_RS00050at 8.297 kb on - strand, within ABIE41_RS00050at 8.297 kb on - strand, within ABIE41_RS00050at 8.355 kb on + strandat 8.355 kb on + strandat 8.356 kb on - strandat 8.356 kb on - strandat 8.756 kb on + strand, within ABIE41_RS00055at 8.757 kb on - strand, within ABIE41_RS00055at 8.757 kb on - strand, within ABIE41_RS00055at 8.757 kb on - strand, within ABIE41_RS00055at 8.823 kb on + strand, within ABIE41_RS00055at 8.823 kb on + strand, within ABIE41_RS00055at 8.824 kb on - strand, within ABIE41_RS00055at 8.954 kb on + strand, within ABIE41_RS00055at 9.002 kb on + strand, within ABIE41_RS00055at 9.003 kb on - strand, within ABIE41_RS00055at 9.003 kb on - strand, within ABIE41_RS00055at 9.003 kb on - strand, within ABIE41_RS00055at 9.079 kb on - strandat 9.079 kb on - strandat 9.079 kb on - strandat 9.174 kb on + strand, within ABIE41_RS00060at 9.260 kb on - strand, within ABIE41_RS00060at 9.426 kb on - strand, within ABIE41_RS00065at 9.430 kb on + strand, within ABIE41_RS00065at 9.430 kb on + strand, within ABIE41_RS00065at 9.430 kb on + strand, within ABIE41_RS00065at 9.430 kb on + strand, within ABIE41_RS00065at 9.431 kb on - strand, within ABIE41_RS00065at 9.431 kb on - strand, within ABIE41_RS00065at 9.431 kb on - strand, within ABIE41_RS00065at 9.616 kb on + strand, within ABIE41_RS00070at 9.616 kb on + strand, within ABIE41_RS00070at 9.616 kb on + strand, within ABIE41_RS00070at 9.616 kb on + strand, within ABIE41_RS00070at 9.617 kb on - strand, within ABIE41_RS00070at 9.617 kb on - strand, within ABIE41_RS00070at 9.793 kb on + strandat 9.793 kb on + strandat 9.794 kb on - strandat 9.794 kb on - strandat 9.807 kb on + strandat 9.807 kb on + strandat 9.807 kb on + strandat 9.808 kb on - strandat 9.813 kb on - strandat 9.845 kb on + strandat 9.964 kb on - strand, within ABIE41_RS00075at 9.965 kb on + strand, within ABIE41_RS00075at 9.965 kb on + strand, within ABIE41_RS00075at 9.965 kb on + strand, within ABIE41_RS00075at 9.965 kb on + strand, within ABIE41_RS00075at 9.965 kb on + strand, within ABIE41_RS00075at 9.965 kb on + strand, within ABIE41_RS00075at 9.965 kb on + strand, within ABIE41_RS00075at 9.965 kb on + strand, within ABIE41_RS00075at 9.966 kb on - strand, within ABIE41_RS00075at 9.966 kb on - strand, within ABIE41_RS00075at 9.966 kb on - strand, within ABIE41_RS00075at 9.966 kb on - strand, within ABIE41_RS00075at 9.966 kb on - strand, within ABIE41_RS00075at 9.966 kb on - strand, within ABIE41_RS00075at 9.966 kb on - strand, within ABIE41_RS00075at 9.966 kb on - strand, within ABIE41_RS00075at 9.966 kb on - strand, within ABIE41_RS00075at 10.082 kb on + strand, within ABIE41_RS00075at 10.082 kb on + strand, within ABIE41_RS00075at 10.082 kb on + strand, within ABIE41_RS00075at 10.082 kb on + strand, within ABIE41_RS00075at 10.083 kb on - strand, within ABIE41_RS00075at 10.086 kb on - strand, within ABIE41_RS00075at 10.086 kb on - strand, within ABIE41_RS00075at 10.086 kb on - strand, within ABIE41_RS00075at 10.086 kb on - strand, within ABIE41_RS00075

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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7,573 + ABIE41_RS00045 0.68 -0.1
7,573 + ABIE41_RS00045 0.68 +1.3
7,573 + ABIE41_RS00045 0.68 -1.1
7,574 - ABIE41_RS00045 0.69 -1.2
7,574 - ABIE41_RS00045 0.69 -0.9
7,603 - ABIE41_RS00045 0.79 -1.0
7,650 + +2.5
7,650 + +0.0
7,650 + +0.4
7,651 - -1.3
7,651 - -0.5
7,703 - -0.3
7,889 + ABIE41_RS00050 0.27 +0.9
7,889 + ABIE41_RS00050 0.27 +0.2
7,889 + ABIE41_RS00050 0.27 -0.8
7,890 - ABIE41_RS00050 0.27 +0.3
7,890 - ABIE41_RS00050 0.27 +0.5
7,890 - ABIE41_RS00050 0.27 +0.5
8,012 - ABIE41_RS00050 0.44 -0.5
8,041 + ABIE41_RS00050 0.48 -1.5
8,041 + ABIE41_RS00050 0.48 -0.1
8,041 + ABIE41_RS00050 0.48 -0.9
8,042 - ABIE41_RS00050 0.48 -0.9
8,042 - ABIE41_RS00050 0.48 +0.4
8,296 + ABIE41_RS00050 0.84 +2.5
8,296 + ABIE41_RS00050 0.84 -1.3
8,297 - ABIE41_RS00050 0.84 -1.5
8,297 - ABIE41_RS00050 0.84 -2.1
8,355 + -0.3
8,355 + -0.2
8,356 - -0.4
8,356 - -0.3
8,756 + ABIE41_RS00055 0.41 -0.6
8,757 - ABIE41_RS00055 0.41 +0.2
8,757 - ABIE41_RS00055 0.41 -0.8
8,757 - ABIE41_RS00055 0.41 -2.7
8,823 + ABIE41_RS00055 0.51 +0.1
8,823 + ABIE41_RS00055 0.51 -0.6
8,824 - ABIE41_RS00055 0.52 -2.4
8,954 + ABIE41_RS00055 0.72 +0.8
9,002 + ABIE41_RS00055 0.79 -0.4
9,003 - ABIE41_RS00055 0.79 +0.5
9,003 - ABIE41_RS00055 0.79 +0.1
9,003 - ABIE41_RS00055 0.79 -0.3
9,079 - -1.4
9,079 - +0.1
9,079 - +1.9
9,174 + ABIE41_RS00060 0.15 +0.6
9,260 - ABIE41_RS00060 0.67 -2.6
9,426 - ABIE41_RS00065 0.37 +1.2
9,430 + ABIE41_RS00065 0.40 -2.2
9,430 + ABIE41_RS00065 0.40 +0.3
9,430 + ABIE41_RS00065 0.40 +0.2
9,430 + ABIE41_RS00065 0.40 -0.2
9,431 - ABIE41_RS00065 0.40 -1.1
9,431 - ABIE41_RS00065 0.40 -0.0
9,431 - ABIE41_RS00065 0.40 -1.4
9,616 + ABIE41_RS00070 0.34 -0.6
9,616 + ABIE41_RS00070 0.34 -1.6
9,616 + ABIE41_RS00070 0.34 -0.2
9,616 + ABIE41_RS00070 0.34 -2.1
9,617 - ABIE41_RS00070 0.34 +1.1
9,617 - ABIE41_RS00070 0.34 +0.4
9,793 + -2.7
9,793 + -1.1
9,794 - +0.2
9,794 - +0.2
9,807 + -0.4
9,807 + -0.2
9,807 + -0.1
9,808 - -0.7
9,813 - -0.7
9,845 + +1.1
9,964 - ABIE41_RS00075 0.12 -0.6
9,965 + ABIE41_RS00075 0.12 +0.4
9,965 + ABIE41_RS00075 0.12 -1.4
9,965 + ABIE41_RS00075 0.12 -0.2
9,965 + ABIE41_RS00075 0.12 +0.4
9,965 + ABIE41_RS00075 0.12 +0.1
9,965 + ABIE41_RS00075 0.12 -0.0
9,965 + ABIE41_RS00075 0.12 -1.8
9,965 + ABIE41_RS00075 0.12 -1.2
9,966 - ABIE41_RS00075 0.13 +1.1
9,966 - ABIE41_RS00075 0.13 +0.3
9,966 - ABIE41_RS00075 0.13 -0.5
9,966 - ABIE41_RS00075 0.13 +0.4
9,966 - ABIE41_RS00075 0.13 -0.1
9,966 - ABIE41_RS00075 0.13 +0.1
9,966 - ABIE41_RS00075 0.13 +1.2
9,966 - ABIE41_RS00075 0.13 +0.0
9,966 - ABIE41_RS00075 0.13 +1.3
10,082 + ABIE41_RS00075 0.23 +0.4
10,082 + ABIE41_RS00075 0.23 -1.5
10,082 + ABIE41_RS00075 0.23 -1.5
10,082 + ABIE41_RS00075 0.23 -0.5
10,083 - ABIE41_RS00075 0.24 +0.2
10,086 - ABIE41_RS00075 0.24 -2.1
10,086 - ABIE41_RS00075 0.24 -2.0
10,086 - ABIE41_RS00075 0.24 -1.5
10,086 - ABIE41_RS00075 0.24 +1.0

Or see this region's nucleotide sequence