Strain Fitness in Bosea sp. OAE506 around ABIE41_RS00045

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS00035 and ABIE41_RS00040 are separated by 25 nucleotidesABIE41_RS00040 and ABIE41_RS00045 are separated by 1 nucleotidesABIE41_RS00045 and ABIE41_RS00050 are separated by 37 nucleotidesABIE41_RS00050 and ABIE41_RS00055 are separated by 82 nucleotides ABIE41_RS00035: ABIE41_RS00035 - anhydro-N-acetylmuramic acid kinase, at 5,940 to 7,040 _RS00035 ABIE41_RS00040: ABIE41_RS00040 - DUF1330 domain-containing protein, at 7,066 to 7,374 _RS00040 ABIE41_RS00045: ABIE41_RS00045 - DUF1330 domain-containing protein, at 7,376 to 7,663 _RS00045 ABIE41_RS00050: ABIE41_RS00050 - orotidine-5'-phosphate decarboxylase, at 7,701 to 8,408 _RS00050 ABIE41_RS00055: ABIE41_RS00055 - DsbA family oxidoreductase, at 8,491 to 9,135 _RS00055 Position (kb) 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6.409 kb on + strand, within ABIE41_RS00035at 6.410 kb on - strand, within ABIE41_RS00035at 6.410 kb on - strand, within ABIE41_RS00035at 6.537 kb on + strand, within ABIE41_RS00035at 6.574 kb on + strand, within ABIE41_RS00035at 6.575 kb on - strand, within ABIE41_RS00035at 6.575 kb on - strand, within ABIE41_RS00035at 6.659 kb on + strand, within ABIE41_RS00035at 6.715 kb on + strand, within ABIE41_RS00035at 6.715 kb on + strand, within ABIE41_RS00035at 6.715 kb on + strand, within ABIE41_RS00035at 6.716 kb on - strand, within ABIE41_RS00035at 6.716 kb on - strand, within ABIE41_RS00035at 6.910 kb on + strand, within ABIE41_RS00035at 6.911 kb on - strand, within ABIE41_RS00035at 6.911 kb on - strand, within ABIE41_RS00035at 6.911 kb on - strand, within ABIE41_RS00035at 6.911 kb on - strand, within ABIE41_RS00035at 7.067 kb on + strandat 7.067 kb on + strandat 7.067 kb on + strandat 7.068 kb on - strandat 7.068 kb on - strandat 7.068 kb on - strandat 7.092 kb on - strandat 7.155 kb on - strand, within ABIE41_RS00040at 7.169 kb on + strand, within ABIE41_RS00040at 7.169 kb on + strand, within ABIE41_RS00040at 7.247 kb on + strand, within ABIE41_RS00040at 7.247 kb on + strand, within ABIE41_RS00040at 7.248 kb on - strand, within ABIE41_RS00040at 7.248 kb on - strand, within ABIE41_RS00040at 7.279 kb on + strand, within ABIE41_RS00040at 7.280 kb on + strand, within ABIE41_RS00040at 7.280 kb on + strand, within ABIE41_RS00040at 7.280 kb on + strand, within ABIE41_RS00040at 7.280 kb on + strand, within ABIE41_RS00040at 7.280 kb on + strand, within ABIE41_RS00040at 7.280 kb on + strand, within ABIE41_RS00040at 7.281 kb on - strand, within ABIE41_RS00040at 7.281 kb on - strand, within ABIE41_RS00040at 7.281 kb on - strand, within ABIE41_RS00040at 7.281 kb on - strand, within ABIE41_RS00040at 7.281 kb on - strand, within ABIE41_RS00040at 7.281 kb on - strand, within ABIE41_RS00040at 7.322 kb on + strand, within ABIE41_RS00040at 7.322 kb on + strand, within ABIE41_RS00040at 7.322 kb on + strand, within ABIE41_RS00040at 7.322 kb on + strand, within ABIE41_RS00040at 7.323 kb on - strand, within ABIE41_RS00040at 7.323 kb on - strand, within ABIE41_RS00040at 7.461 kb on + strand, within ABIE41_RS00045at 7.461 kb on + strand, within ABIE41_RS00045at 7.461 kb on + strand, within ABIE41_RS00045at 7.462 kb on - strand, within ABIE41_RS00045at 7.462 kb on - strand, within ABIE41_RS00045at 7.462 kb on - strand, within ABIE41_RS00045at 7.573 kb on + strand, within ABIE41_RS00045at 7.573 kb on + strand, within ABIE41_RS00045at 7.573 kb on + strand, within ABIE41_RS00045at 7.574 kb on - strand, within ABIE41_RS00045at 7.574 kb on - strand, within ABIE41_RS00045at 7.603 kb on - strand, within ABIE41_RS00045at 7.650 kb on + strandat 7.650 kb on + strandat 7.650 kb on + strandat 7.651 kb on - strandat 7.651 kb on - strandat 7.703 kb on - strandat 7.889 kb on + strand, within ABIE41_RS00050at 7.889 kb on + strand, within ABIE41_RS00050at 7.889 kb on + strand, within ABIE41_RS00050at 7.890 kb on - strand, within ABIE41_RS00050at 7.890 kb on - strand, within ABIE41_RS00050at 7.890 kb on - strand, within ABIE41_RS00050at 8.012 kb on - strand, within ABIE41_RS00050at 8.041 kb on + strand, within ABIE41_RS00050at 8.041 kb on + strand, within ABIE41_RS00050at 8.041 kb on + strand, within ABIE41_RS00050at 8.042 kb on - strand, within ABIE41_RS00050at 8.042 kb on - strand, within ABIE41_RS00050at 8.296 kb on + strand, within ABIE41_RS00050at 8.296 kb on + strand, within ABIE41_RS00050at 8.297 kb on - strand, within ABIE41_RS00050at 8.297 kb on - strand, within ABIE41_RS00050at 8.355 kb on + strandat 8.355 kb on + strandat 8.356 kb on - strandat 8.356 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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6,409 + ABIE41_RS00035 0.43 -0.5
6,410 - ABIE41_RS00035 0.43 +0.8
6,410 - ABIE41_RS00035 0.43 -0.1
6,537 + ABIE41_RS00035 0.54 +0.3
6,574 + ABIE41_RS00035 0.58 +0.1
6,575 - ABIE41_RS00035 0.58 +0.9
6,575 - ABIE41_RS00035 0.58 -0.3
6,659 + ABIE41_RS00035 0.65 -1.5
6,715 + ABIE41_RS00035 0.70 -0.5
6,715 + ABIE41_RS00035 0.70 -2.8
6,715 + ABIE41_RS00035 0.70 +0.5
6,716 - ABIE41_RS00035 0.70 +0.3
6,716 - ABIE41_RS00035 0.70 -1.8
6,910 + ABIE41_RS00035 0.88 -0.4
6,911 - ABIE41_RS00035 0.88 +0.2
6,911 - ABIE41_RS00035 0.88 +0.1
6,911 - ABIE41_RS00035 0.88 +0.0
6,911 - ABIE41_RS00035 0.88 +0.1
7,067 + +0.5
7,067 + -0.7
7,067 + -1.7
7,068 - -0.0
7,068 - -0.0
7,068 - +0.1
7,092 - +0.2
7,155 - ABIE41_RS00040 0.29 +0.5
7,169 + ABIE41_RS00040 0.33 -1.5
7,169 + ABIE41_RS00040 0.33 +0.9
7,247 + ABIE41_RS00040 0.59 -1.9
7,247 + ABIE41_RS00040 0.59 +0.2
7,248 - ABIE41_RS00040 0.59 +0.3
7,248 - ABIE41_RS00040 0.59 -0.3
7,279 + ABIE41_RS00040 0.69 +0.5
7,280 + ABIE41_RS00040 0.69 +0.4
7,280 + ABIE41_RS00040 0.69 -0.4
7,280 + ABIE41_RS00040 0.69 -1.1
7,280 + ABIE41_RS00040 0.69 -1.0
7,280 + ABIE41_RS00040 0.69 -0.4
7,280 + ABIE41_RS00040 0.69 -0.4
7,281 - ABIE41_RS00040 0.70 -1.3
7,281 - ABIE41_RS00040 0.70 +0.1
7,281 - ABIE41_RS00040 0.70 +0.9
7,281 - ABIE41_RS00040 0.70 +1.3
7,281 - ABIE41_RS00040 0.70 +0.4
7,281 - ABIE41_RS00040 0.70 -0.1
7,322 + ABIE41_RS00040 0.83 -0.8
7,322 + ABIE41_RS00040 0.83 +1.9
7,322 + ABIE41_RS00040 0.83 -0.0
7,322 + ABIE41_RS00040 0.83 +0.4
7,323 - ABIE41_RS00040 0.83 +1.1
7,323 - ABIE41_RS00040 0.83 -0.4
7,461 + ABIE41_RS00045 0.30 -0.1
7,461 + ABIE41_RS00045 0.30 -0.9
7,461 + ABIE41_RS00045 0.30 +0.1
7,462 - ABIE41_RS00045 0.30 +0.4
7,462 - ABIE41_RS00045 0.30 +1.9
7,462 - ABIE41_RS00045 0.30 -0.0
7,573 + ABIE41_RS00045 0.68 -0.1
7,573 + ABIE41_RS00045 0.68 +1.3
7,573 + ABIE41_RS00045 0.68 -1.1
7,574 - ABIE41_RS00045 0.69 -1.2
7,574 - ABIE41_RS00045 0.69 -0.9
7,603 - ABIE41_RS00045 0.79 -1.0
7,650 + +2.5
7,650 + +0.0
7,650 + +0.4
7,651 - -1.3
7,651 - -0.5
7,703 - -0.3
7,889 + ABIE41_RS00050 0.27 +0.9
7,889 + ABIE41_RS00050 0.27 +0.2
7,889 + ABIE41_RS00050 0.27 -0.8
7,890 - ABIE41_RS00050 0.27 +0.3
7,890 - ABIE41_RS00050 0.27 +0.5
7,890 - ABIE41_RS00050 0.27 +0.5
8,012 - ABIE41_RS00050 0.44 -0.5
8,041 + ABIE41_RS00050 0.48 -1.5
8,041 + ABIE41_RS00050 0.48 -0.1
8,041 + ABIE41_RS00050 0.48 -0.9
8,042 - ABIE41_RS00050 0.48 -0.9
8,042 - ABIE41_RS00050 0.48 +0.4
8,296 + ABIE41_RS00050 0.84 +2.5
8,296 + ABIE41_RS00050 0.84 -1.3
8,297 - ABIE41_RS00050 0.84 -1.5
8,297 - ABIE41_RS00050 0.84 -2.1
8,355 + -0.3
8,355 + -0.2
8,356 - -0.4
8,356 - -0.3

Or see this region's nucleotide sequence