Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4822

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4821 and PfGW456L13_4822 are separated by 772 nucleotidesPfGW456L13_4822 and PfGW456L13_4823 overlap by 4 nucleotidesPfGW456L13_4823 and PfGW456L13_4824 are separated by 120 nucleotides PfGW456L13_4821 - Putative preQ0 transporter, at 5,385,998 to 5,386,465 _4821 PfGW456L13_4822 - Mobile element protein, at 5,387,238 to 5,387,543 _4822 PfGW456L13_4823 - Mobile element protein, at 5,387,540 to 5,388,376 _4823 PfGW456L13_4824 - FIG00954164: hypothetical protein, at 5,388,497 to 5,388,712 _4824 Position (kb) 5387 5388Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5386.281 kb on + strand, within PfGW456L13_4821at 5386.281 kb on + strand, within PfGW456L13_4821at 5386.281 kb on + strand, within PfGW456L13_4821at 5386.281 kb on + strand, within PfGW456L13_4821at 5386.281 kb on + strand, within PfGW456L13_4821at 5386.282 kb on - strand, within PfGW456L13_4821at 5386.282 kb on - strand, within PfGW456L13_4821at 5386.282 kb on - strand, within PfGW456L13_4821at 5386.282 kb on - strand, within PfGW456L13_4821at 5386.282 kb on - strand, within PfGW456L13_4821at 5386.282 kb on - strand, within PfGW456L13_4821at 5386.282 kb on - strand, within PfGW456L13_4821at 5386.419 kb on + strandat 5386.419 kb on + strandat 5386.420 kb on - strandat 5386.446 kb on + strandat 5386.447 kb on - strandat 5386.447 kb on - strandat 5386.477 kb on + strandat 5386.477 kb on + strandat 5386.478 kb on - strandat 5386.483 kb on + strandat 5386.483 kb on + strandat 5386.501 kb on + strandat 5386.501 kb on + strandat 5386.502 kb on - strandat 5386.507 kb on - strandat 5386.507 kb on - strandat 5386.507 kb on - strandat 5386.540 kb on + strandat 5386.717 kb on - strandat 5386.717 kb on - strandat 5387.187 kb on - strandat 5387.187 kb on - strandat 5388.400 kb on + strandat 5388.425 kb on + strandat 5388.425 kb on + strandat 5388.518 kb on + strandat 5388.518 kb on + strandat 5388.518 kb on + strandat 5388.518 kb on + strandat 5388.518 kb on + strandat 5388.519 kb on - strand, within PfGW456L13_4824at 5388.519 kb on - strand, within PfGW456L13_4824at 5388.519 kb on - strand, within PfGW456L13_4824at 5388.519 kb on - strand, within PfGW456L13_4824

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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5,386,281 + PfGW456L13_4821 0.60 -1.0
5,386,281 + PfGW456L13_4821 0.60 -1.5
5,386,281 + PfGW456L13_4821 0.60 +0.4
5,386,281 + PfGW456L13_4821 0.60 +1.2
5,386,281 + PfGW456L13_4821 0.60 -1.7
5,386,282 - PfGW456L13_4821 0.61 -1.4
5,386,282 - PfGW456L13_4821 0.61 +0.8
5,386,282 - PfGW456L13_4821 0.61 +0.9
5,386,282 - PfGW456L13_4821 0.61 +0.6
5,386,282 - PfGW456L13_4821 0.61 +1.6
5,386,282 - PfGW456L13_4821 0.61 +1.4
5,386,282 - PfGW456L13_4821 0.61 +0.9
5,386,419 + +1.2
5,386,419 + +0.0
5,386,420 - -1.9
5,386,446 + -2.1
5,386,447 - +0.3
5,386,447 - +1.1
5,386,477 + -0.1
5,386,477 + +0.7
5,386,478 - +0.1
5,386,483 + -0.8
5,386,483 + +0.2
5,386,501 + +0.9
5,386,501 + +1.2
5,386,502 - +0.2
5,386,507 - +3.2
5,386,507 - +1.2
5,386,507 - -1.8
5,386,540 + -1.4
5,386,717 - -0.6
5,386,717 - -0.1
5,387,187 - +1.0
5,387,187 - -1.7
5,388,400 + -1.1
5,388,425 + +0.4
5,388,425 + +0.9
5,388,518 + +1.2
5,388,518 + -1.1
5,388,518 + -0.3
5,388,518 + +0.8
5,388,518 + +0.7
5,388,519 - PfGW456L13_4824 0.10 +1.3
5,388,519 - PfGW456L13_4824 0.10 -0.2
5,388,519 - PfGW456L13_4824 0.10 -0.9
5,388,519 - PfGW456L13_4824 0.10 -0.6

Or see this region's nucleotide sequence