Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4433

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4432 and PfGW456L13_4433 are separated by 144 nucleotidesPfGW456L13_4433 and PfGW456L13_4434 are separated by 5 nucleotides PfGW456L13_4432 - HlyD family secretion protein, at 4,955,320 to 4,956,675 _4432 PfGW456L13_4433 - FIG00955751: hypothetical protein, at 4,956,820 to 4,957,416 _4433 PfGW456L13_4434 - Transcriptional regulator GbuR, at 4,957,422 to 4,958,315 _4434 Position (kb) 4956 4957 4958Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4955.864 kb on + strand, within PfGW456L13_4432at 4955.864 kb on + strand, within PfGW456L13_4432at 4955.886 kb on - strand, within PfGW456L13_4432at 4956.354 kb on - strand, within PfGW456L13_4432at 4956.415 kb on + strand, within PfGW456L13_4432at 4956.416 kb on - strand, within PfGW456L13_4432at 4956.416 kb on - strand, within PfGW456L13_4432at 4956.421 kb on + strand, within PfGW456L13_4432at 4956.421 kb on + strand, within PfGW456L13_4432at 4956.421 kb on + strand, within PfGW456L13_4432at 4956.421 kb on + strand, within PfGW456L13_4432at 4956.422 kb on - strand, within PfGW456L13_4432at 4956.422 kb on - strand, within PfGW456L13_4432at 4956.431 kb on - strand, within PfGW456L13_4432at 4956.502 kb on + strandat 4956.503 kb on - strand, within PfGW456L13_4432at 4956.595 kb on - strandat 4956.595 kb on - strandat 4956.595 kb on - strandat 4956.595 kb on - strandat 4956.598 kb on - strandat 4956.622 kb on + strandat 4956.623 kb on - strandat 4956.674 kb on - strandat 4956.681 kb on - strandat 4956.748 kb on + strandat 4956.749 kb on - strandat 4956.837 kb on + strandat 4956.837 kb on + strandat 4956.837 kb on + strandat 4956.837 kb on + strandat 4956.837 kb on + strandat 4956.838 kb on - strandat 4956.838 kb on - strandat 4956.838 kb on - strandat 4956.838 kb on - strandat 4957.096 kb on - strand, within PfGW456L13_4433at 4957.327 kb on + strand, within PfGW456L13_4433at 4957.423 kb on + strandat 4957.424 kb on - strandat 4957.445 kb on + strandat 4957.445 kb on + strandat 4957.523 kb on - strand, within PfGW456L13_4434at 4957.582 kb on + strand, within PfGW456L13_4434at 4957.583 kb on - strand, within PfGW456L13_4434at 4957.583 kb on - strand, within PfGW456L13_4434at 4957.606 kb on + strand, within PfGW456L13_4434at 4957.607 kb on - strand, within PfGW456L13_4434at 4957.643 kb on + strand, within PfGW456L13_4434at 4957.644 kb on - strand, within PfGW456L13_4434at 4957.644 kb on - strand, within PfGW456L13_4434at 4957.789 kb on + strand, within PfGW456L13_4434at 4957.789 kb on + strand, within PfGW456L13_4434at 4957.789 kb on + strand, within PfGW456L13_4434at 4957.789 kb on + strand, within PfGW456L13_4434at 4957.789 kb on + strand, within PfGW456L13_4434at 4957.789 kb on + strand, within PfGW456L13_4434at 4957.790 kb on - strand, within PfGW456L13_4434at 4957.790 kb on - strand, within PfGW456L13_4434at 4957.790 kb on - strand, within PfGW456L13_4434at 4957.822 kb on + strand, within PfGW456L13_4434at 4957.822 kb on + strand, within PfGW456L13_4434at 4957.822 kb on + strand, within PfGW456L13_4434at 4957.823 kb on - strand, within PfGW456L13_4434at 4957.823 kb on - strand, within PfGW456L13_4434at 4957.823 kb on - strand, within PfGW456L13_4434at 4957.823 kb on - strand, within PfGW456L13_4434at 4957.823 kb on - strand, within PfGW456L13_4434at 4957.823 kb on - strand, within PfGW456L13_4434at 4957.954 kb on + strand, within PfGW456L13_4434at 4957.955 kb on - strand, within PfGW456L13_4434at 4958.059 kb on + strand, within PfGW456L13_4434at 4958.060 kb on - strand, within PfGW456L13_4434at 4958.126 kb on + strand, within PfGW456L13_4434at 4958.126 kb on + strandat 4958.127 kb on - strand, within PfGW456L13_4434at 4958.127 kb on - strand, within PfGW456L13_4434at 4958.197 kb on + strand, within PfGW456L13_4434at 4958.197 kb on + strand, within PfGW456L13_4434at 4958.197 kb on + strand, within PfGW456L13_4434at 4958.197 kb on + strand, within PfGW456L13_4434at 4958.197 kb on + strand, within PfGW456L13_4434at 4958.197 kb on + strand, within PfGW456L13_4434at 4958.197 kb on + strand, within PfGW456L13_4434at 4958.198 kb on - strand, within PfGW456L13_4434at 4958.198 kb on - strand, within PfGW456L13_4434at 4958.198 kb on - strand, within PfGW456L13_4434at 4958.198 kb on - strand, within PfGW456L13_4434at 4958.286 kb on + strandat 4958.287 kb on - strandat 4958.287 kb on - strandat 4958.287 kb on - strandat 4958.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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4,955,864 + PfGW456L13_4432 0.40 -0.5
4,955,864 + PfGW456L13_4432 0.40 -0.3
4,955,886 - PfGW456L13_4432 0.42 -1.7
4,956,354 - PfGW456L13_4432 0.76 +0.2
4,956,415 + PfGW456L13_4432 0.81 +0.1
4,956,416 - PfGW456L13_4432 0.81 +1.5
4,956,416 - PfGW456L13_4432 0.81 -1.4
4,956,421 + PfGW456L13_4432 0.81 -0.1
4,956,421 + PfGW456L13_4432 0.81 +0.3
4,956,421 + PfGW456L13_4432 0.81 +0.7
4,956,421 + PfGW456L13_4432 0.81 -0.4
4,956,422 - PfGW456L13_4432 0.81 -0.4
4,956,422 - PfGW456L13_4432 0.81 +0.2
4,956,431 - PfGW456L13_4432 0.82 -3.1
4,956,502 + +1.6
4,956,503 - PfGW456L13_4432 0.87 -0.4
4,956,595 - +1.1
4,956,595 - +0.0
4,956,595 - +0.5
4,956,595 - -1.4
4,956,598 - -1.7
4,956,622 + +3.2
4,956,623 - +1.9
4,956,674 - -1.7
4,956,681 - -0.9
4,956,748 + -0.9
4,956,749 - -0.7
4,956,837 + -1.2
4,956,837 + +0.6
4,956,837 + +1.2
4,956,837 + -2.6
4,956,837 + -1.5
4,956,838 - -1.1
4,956,838 - +1.0
4,956,838 - +0.7
4,956,838 - +1.2
4,957,096 - PfGW456L13_4433 0.46 +1.9
4,957,327 + PfGW456L13_4433 0.85 +1.7
4,957,423 + +0.8
4,957,424 - -0.6
4,957,445 + -1.0
4,957,445 + +0.5
4,957,523 - PfGW456L13_4434 0.11 -1.8
4,957,582 + PfGW456L13_4434 0.18 +1.1
4,957,583 - PfGW456L13_4434 0.18 +0.1
4,957,583 - PfGW456L13_4434 0.18 +0.9
4,957,606 + PfGW456L13_4434 0.21 +0.0
4,957,607 - PfGW456L13_4434 0.21 -1.2
4,957,643 + PfGW456L13_4434 0.25 +1.1
4,957,644 - PfGW456L13_4434 0.25 -1.4
4,957,644 - PfGW456L13_4434 0.25 +0.0
4,957,789 + PfGW456L13_4434 0.41 -0.8
4,957,789 + PfGW456L13_4434 0.41 +1.4
4,957,789 + PfGW456L13_4434 0.41 -2.6
4,957,789 + PfGW456L13_4434 0.41 -0.7
4,957,789 + PfGW456L13_4434 0.41 +0.5
4,957,789 + PfGW456L13_4434 0.41 +1.8
4,957,790 - PfGW456L13_4434 0.41 -0.0
4,957,790 - PfGW456L13_4434 0.41 -1.4
4,957,790 - PfGW456L13_4434 0.41 -1.1
4,957,822 + PfGW456L13_4434 0.45 -0.0
4,957,822 + PfGW456L13_4434 0.45 +1.4
4,957,822 + PfGW456L13_4434 0.45 +0.2
4,957,823 - PfGW456L13_4434 0.45 -0.8
4,957,823 - PfGW456L13_4434 0.45 +0.8
4,957,823 - PfGW456L13_4434 0.45 -0.5
4,957,823 - PfGW456L13_4434 0.45 -0.1
4,957,823 - PfGW456L13_4434 0.45 +0.4
4,957,823 - PfGW456L13_4434 0.45 +0.6
4,957,954 + PfGW456L13_4434 0.60 -2.4
4,957,955 - PfGW456L13_4434 0.60 -2.3
4,958,059 + PfGW456L13_4434 0.71 -1.5
4,958,060 - PfGW456L13_4434 0.71 -1.5
4,958,126 + PfGW456L13_4434 0.79 +0.7
4,958,126 + +1.2
4,958,127 - PfGW456L13_4434 0.79 +1.0
4,958,127 - PfGW456L13_4434 0.79 +0.9
4,958,197 + PfGW456L13_4434 0.87 -2.8
4,958,197 + PfGW456L13_4434 0.87 +1.0
4,958,197 + PfGW456L13_4434 0.87 -0.1
4,958,197 + PfGW456L13_4434 0.87 -1.9
4,958,197 + PfGW456L13_4434 0.87 +1.2
4,958,197 + PfGW456L13_4434 0.87 +0.6
4,958,197 + PfGW456L13_4434 0.87 +1.1
4,958,198 - PfGW456L13_4434 0.87 +0.6
4,958,198 - PfGW456L13_4434 0.87 +0.4
4,958,198 - PfGW456L13_4434 0.87 +1.1
4,958,198 - PfGW456L13_4434 0.87 -0.2
4,958,286 + -1.1
4,958,287 - -2.3
4,958,287 - -0.4
4,958,287 - -1.2
4,958,287 - -1.5

Or see this region's nucleotide sequence