Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4176

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4175 and PfGW456L13_4176 are separated by 82 nucleotidesPfGW456L13_4176 and PfGW456L13_4177 are separated by 289 nucleotides PfGW456L13_4175 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 4,687,109 to 4,688,275 _4175 PfGW456L13_4176 - Transcriptional regulator, MarR family, at 4,688,358 to 4,688,801 _4176 PfGW456L13_4177 - Xanthine/uracil/thiamine/ascorbate permease family protein, at 4,689,091 to 4,690,440 _4177 Position (kb) 4688 4689Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4687.441 kb on + strand, within PfGW456L13_4175at 4687.455 kb on + strand, within PfGW456L13_4175at 4687.455 kb on + strand, within PfGW456L13_4175at 4687.572 kb on + strand, within PfGW456L13_4175at 4687.572 kb on + strand, within PfGW456L13_4175at 4687.620 kb on + strand, within PfGW456L13_4175at 4687.620 kb on + strand, within PfGW456L13_4175at 4687.620 kb on + strand, within PfGW456L13_4175at 4687.620 kb on + strand, within PfGW456L13_4175at 4687.620 kb on + strand, within PfGW456L13_4175at 4687.620 kb on + strand, within PfGW456L13_4175at 4687.620 kb on + strand, within PfGW456L13_4175at 4687.621 kb on - strand, within PfGW456L13_4175at 4687.621 kb on - strand, within PfGW456L13_4175at 4687.767 kb on + strand, within PfGW456L13_4175at 4687.806 kb on + strand, within PfGW456L13_4175at 4687.806 kb on + strand, within PfGW456L13_4175at 4687.806 kb on + strand, within PfGW456L13_4175at 4687.806 kb on + strand, within PfGW456L13_4175at 4687.806 kb on + strand, within PfGW456L13_4175at 4687.807 kb on - strand, within PfGW456L13_4175at 4687.807 kb on - strand, within PfGW456L13_4175at 4687.807 kb on - strand, within PfGW456L13_4175at 4687.807 kb on - strand, within PfGW456L13_4175at 4687.807 kb on - strand, within PfGW456L13_4175at 4687.807 kb on - strand, within PfGW456L13_4175at 4687.807 kb on - strand, within PfGW456L13_4175at 4687.845 kb on - strand, within PfGW456L13_4175at 4687.932 kb on + strand, within PfGW456L13_4175at 4687.932 kb on + strand, within PfGW456L13_4175at 4687.932 kb on + strand, within PfGW456L13_4175at 4687.933 kb on - strand, within PfGW456L13_4175at 4687.973 kb on - strand, within PfGW456L13_4175at 4687.974 kb on + strand, within PfGW456L13_4175at 4687.974 kb on + strand, within PfGW456L13_4175at 4687.974 kb on + strand, within PfGW456L13_4175at 4687.974 kb on + strand, within PfGW456L13_4175at 4687.974 kb on + strand, within PfGW456L13_4175at 4687.974 kb on + strand, within PfGW456L13_4175at 4687.974 kb on + strand, within PfGW456L13_4175at 4687.974 kb on + strand, within PfGW456L13_4175at 4687.974 kb on + strand, within PfGW456L13_4175at 4687.975 kb on - strand, within PfGW456L13_4175at 4687.975 kb on - strand, within PfGW456L13_4175at 4687.975 kb on - strand, within PfGW456L13_4175at 4687.975 kb on - strand, within PfGW456L13_4175at 4687.975 kb on - strand, within PfGW456L13_4175at 4687.975 kb on - strand, within PfGW456L13_4175at 4687.975 kb on - strand, within PfGW456L13_4175at 4687.975 kb on - strand, within PfGW456L13_4175at 4688.025 kb on - strand, within PfGW456L13_4175at 4688.245 kb on + strandat 4688.349 kb on + strandat 4688.636 kb on + strand, within PfGW456L13_4176at 4688.843 kb on - strandat 4688.895 kb on + strandat 4688.895 kb on + strandat 4688.896 kb on - strandat 4688.896 kb on - strandat 4688.897 kb on + strandat 4688.897 kb on + strandat 4688.897 kb on + strandat 4688.897 kb on + strandat 4688.897 kb on + strandat 4688.897 kb on + strandat 4688.897 kb on + strandat 4688.898 kb on - strandat 4688.898 kb on - strandat 4688.898 kb on - strandat 4688.898 kb on - strandat 4688.898 kb on - strandat 4688.898 kb on - strandat 4688.940 kb on - strandat 4688.966 kb on + strandat 4688.967 kb on - strandat 4689.015 kb on + strandat 4689.015 kb on + strandat 4689.015 kb on + strandat 4689.016 kb on - strandat 4689.016 kb on - strandat 4689.016 kb on - strandat 4689.016 kb on - strandat 4689.067 kb on + strandat 4689.067 kb on + strandat 4689.084 kb on - strandat 4689.241 kb on + strand, within PfGW456L13_4177at 4689.241 kb on + strand, within PfGW456L13_4177at 4689.241 kb on + strand, within PfGW456L13_4177at 4689.241 kb on + strand, within PfGW456L13_4177at 4689.241 kb on + strand, within PfGW456L13_4177at 4689.241 kb on + strand, within PfGW456L13_4177at 4689.241 kb on + strand, within PfGW456L13_4177at 4689.241 kb on + strand, within PfGW456L13_4177at 4689.241 kb on + strand, within PfGW456L13_4177at 4689.241 kb on + strand, within PfGW456L13_4177at 4689.241 kb on + strand, within PfGW456L13_4177at 4689.241 kb on + strand, within PfGW456L13_4177at 4689.241 kb on + strand, within PfGW456L13_4177at 4689.241 kb on + strand, within PfGW456L13_4177at 4689.241 kb on + strand, within PfGW456L13_4177at 4689.241 kb on + strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.242 kb on - strand, within PfGW456L13_4177at 4689.353 kb on - strand, within PfGW456L13_4177at 4689.409 kb on + strand, within PfGW456L13_4177at 4689.409 kb on + strand, within PfGW456L13_4177at 4689.409 kb on + strand, within PfGW456L13_4177at 4689.410 kb on - strand, within PfGW456L13_4177at 4689.410 kb on - strand, within PfGW456L13_4177at 4689.410 kb on - strand, within PfGW456L13_4177at 4689.433 kb on + strand, within PfGW456L13_4177at 4689.433 kb on + strand, within PfGW456L13_4177at 4689.433 kb on + strand, within PfGW456L13_4177at 4689.433 kb on + strand, within PfGW456L13_4177at 4689.433 kb on + strand, within PfGW456L13_4177at 4689.434 kb on - strand, within PfGW456L13_4177at 4689.434 kb on - strand, within PfGW456L13_4177at 4689.434 kb on - strand, within PfGW456L13_4177at 4689.607 kb on - strand, within PfGW456L13_4177at 4689.709 kb on + strand, within PfGW456L13_4177at 4689.709 kb on + strand, within PfGW456L13_4177at 4689.710 kb on - strand, within PfGW456L13_4177at 4689.710 kb on - strand, within PfGW456L13_4177at 4689.710 kb on - strand, within PfGW456L13_4177at 4689.787 kb on + strand, within PfGW456L13_4177at 4689.787 kb on + strand, within PfGW456L13_4177at 4689.787 kb on + strand, within PfGW456L13_4177at 4689.787 kb on + strand, within PfGW456L13_4177

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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4,687,441 + PfGW456L13_4175 0.28 +1.3
4,687,455 + PfGW456L13_4175 0.30 +1.2
4,687,455 + PfGW456L13_4175 0.30 -1.3
4,687,572 + PfGW456L13_4175 0.40 +0.9
4,687,572 + PfGW456L13_4175 0.40 -0.4
4,687,620 + PfGW456L13_4175 0.44 -1.7
4,687,620 + PfGW456L13_4175 0.44 +0.4
4,687,620 + PfGW456L13_4175 0.44 +0.4
4,687,620 + PfGW456L13_4175 0.44 +0.8
4,687,620 + PfGW456L13_4175 0.44 -1.5
4,687,620 + PfGW456L13_4175 0.44 -1.4
4,687,620 + PfGW456L13_4175 0.44 -0.2
4,687,621 - PfGW456L13_4175 0.44 +1.3
4,687,621 - PfGW456L13_4175 0.44 -0.1
4,687,767 + PfGW456L13_4175 0.56 -0.3
4,687,806 + PfGW456L13_4175 0.60 +0.7
4,687,806 + PfGW456L13_4175 0.60 -2.2
4,687,806 + PfGW456L13_4175 0.60 +0.4
4,687,806 + PfGW456L13_4175 0.60 -1.1
4,687,806 + PfGW456L13_4175 0.60 +0.9
4,687,807 - PfGW456L13_4175 0.60 -1.3
4,687,807 - PfGW456L13_4175 0.60 -1.8
4,687,807 - PfGW456L13_4175 0.60 +0.9
4,687,807 - PfGW456L13_4175 0.60 +0.7
4,687,807 - PfGW456L13_4175 0.60 +1.0
4,687,807 - PfGW456L13_4175 0.60 -0.2
4,687,807 - PfGW456L13_4175 0.60 +1.2
4,687,845 - PfGW456L13_4175 0.63 +0.5
4,687,932 + PfGW456L13_4175 0.71 +1.4
4,687,932 + PfGW456L13_4175 0.71 -0.1
4,687,932 + PfGW456L13_4175 0.71 -2.1
4,687,933 - PfGW456L13_4175 0.71 -1.7
4,687,973 - PfGW456L13_4175 0.74 -0.7
4,687,974 + PfGW456L13_4175 0.74 -0.4
4,687,974 + PfGW456L13_4175 0.74 -1.1
4,687,974 + PfGW456L13_4175 0.74 -0.8
4,687,974 + PfGW456L13_4175 0.74 -0.2
4,687,974 + PfGW456L13_4175 0.74 -0.4
4,687,974 + PfGW456L13_4175 0.74 +1.0
4,687,974 + PfGW456L13_4175 0.74 -0.2
4,687,974 + PfGW456L13_4175 0.74 -2.0
4,687,974 + PfGW456L13_4175 0.74 -1.1
4,687,975 - PfGW456L13_4175 0.74 +0.2
4,687,975 - PfGW456L13_4175 0.74 -2.4
4,687,975 - PfGW456L13_4175 0.74 -1.3
4,687,975 - PfGW456L13_4175 0.74 +1.2
4,687,975 - PfGW456L13_4175 0.74 +0.3
4,687,975 - PfGW456L13_4175 0.74 +0.4
4,687,975 - PfGW456L13_4175 0.74 +0.4
4,687,975 - PfGW456L13_4175 0.74 +0.6
4,688,025 - PfGW456L13_4175 0.78 +0.9
4,688,245 + -0.2
4,688,349 + +0.6
4,688,636 + PfGW456L13_4176 0.63 -0.1
4,688,843 - -1.3
4,688,895 + -2.4
4,688,895 + +0.2
4,688,896 - -0.1
4,688,896 - -0.3
4,688,897 + +0.8
4,688,897 + +0.8
4,688,897 + -1.0
4,688,897 + -1.5
4,688,897 + +0.7
4,688,897 + +1.3
4,688,897 + -1.1
4,688,898 - -2.3
4,688,898 - +1.8
4,688,898 - -1.0
4,688,898 - -1.3
4,688,898 - -1.9
4,688,898 - -0.3
4,688,940 - +3.2
4,688,966 + -1.5
4,688,967 - +1.2
4,689,015 + -1.1
4,689,015 + +0.6
4,689,015 + +0.2
4,689,016 - +0.3
4,689,016 - -0.1
4,689,016 - -0.6
4,689,016 - -1.3
4,689,067 + +0.8
4,689,067 + -3.0
4,689,084 - -2.0
4,689,241 + PfGW456L13_4177 0.11 -0.2
4,689,241 + PfGW456L13_4177 0.11 +0.6
4,689,241 + PfGW456L13_4177 0.11 +0.4
4,689,241 + PfGW456L13_4177 0.11 -0.5
4,689,241 + PfGW456L13_4177 0.11 +1.3
4,689,241 + PfGW456L13_4177 0.11 +1.2
4,689,241 + PfGW456L13_4177 0.11 -1.7
4,689,241 + PfGW456L13_4177 0.11 -2.4
4,689,241 + PfGW456L13_4177 0.11 -2.2
4,689,241 + PfGW456L13_4177 0.11 -0.3
4,689,241 + PfGW456L13_4177 0.11 +0.3
4,689,241 + PfGW456L13_4177 0.11 -1.8
4,689,241 + PfGW456L13_4177 0.11 -2.7
4,689,241 + PfGW456L13_4177 0.11 +0.2
4,689,241 + PfGW456L13_4177 0.11 -2.0
4,689,241 + PfGW456L13_4177 0.11 -0.4
4,689,242 - PfGW456L13_4177 0.11 +0.2
4,689,242 - PfGW456L13_4177 0.11 +1.9
4,689,242 - PfGW456L13_4177 0.11 -0.7
4,689,242 - PfGW456L13_4177 0.11 -1.4
4,689,242 - PfGW456L13_4177 0.11 +1.8
4,689,242 - PfGW456L13_4177 0.11 -0.4
4,689,242 - PfGW456L13_4177 0.11 -1.6
4,689,242 - PfGW456L13_4177 0.11 -0.5
4,689,242 - PfGW456L13_4177 0.11 -2.5
4,689,242 - PfGW456L13_4177 0.11 -1.1
4,689,242 - PfGW456L13_4177 0.11 +0.3
4,689,242 - PfGW456L13_4177 0.11 -2.5
4,689,242 - PfGW456L13_4177 0.11 +1.2
4,689,242 - PfGW456L13_4177 0.11 +0.8
4,689,242 - PfGW456L13_4177 0.11 +0.6
4,689,242 - PfGW456L13_4177 0.11 +0.9
4,689,242 - PfGW456L13_4177 0.11 +0.3
4,689,242 - PfGW456L13_4177 0.11 +0.4
4,689,353 - PfGW456L13_4177 0.19 -0.5
4,689,409 + PfGW456L13_4177 0.24 -0.5
4,689,409 + PfGW456L13_4177 0.24 +1.0
4,689,409 + PfGW456L13_4177 0.24 +1.2
4,689,410 - PfGW456L13_4177 0.24 +1.4
4,689,410 - PfGW456L13_4177 0.24 +0.6
4,689,410 - PfGW456L13_4177 0.24 -0.8
4,689,433 + PfGW456L13_4177 0.25 -1.1
4,689,433 + PfGW456L13_4177 0.25 -1.0
4,689,433 + PfGW456L13_4177 0.25 +0.4
4,689,433 + PfGW456L13_4177 0.25 +0.6
4,689,433 + PfGW456L13_4177 0.25 +1.6
4,689,434 - PfGW456L13_4177 0.25 -0.7
4,689,434 - PfGW456L13_4177 0.25 +2.3
4,689,434 - PfGW456L13_4177 0.25 -1.2
4,689,607 - PfGW456L13_4177 0.38 -2.3
4,689,709 + PfGW456L13_4177 0.46 -2.4
4,689,709 + PfGW456L13_4177 0.46 -0.1
4,689,710 - PfGW456L13_4177 0.46 +1.7
4,689,710 - PfGW456L13_4177 0.46 +0.7
4,689,710 - PfGW456L13_4177 0.46 -0.2
4,689,787 + PfGW456L13_4177 0.52 -0.6
4,689,787 + PfGW456L13_4177 0.52 -0.5
4,689,787 + PfGW456L13_4177 0.52 -1.1
4,689,787 + PfGW456L13_4177 0.52 +0.2

Or see this region's nucleotide sequence