Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2628

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2627 and PfGW456L13_2628 overlap by 4 nucleotidesPfGW456L13_2628 and PfGW456L13_2629 are separated by 135 nucleotides PfGW456L13_2627 - NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3), at 2,923,572 to 2,924,579 _2627 PfGW456L13_2628 - NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3), at 2,924,576 to 2,927,290 _2628 PfGW456L13_2629 - NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3), at 2,927,426 to 2,928,781 _2629 Position (kb) 2924 2925 2926 2927 2928Strain fitness (log2 ratio) -1 0 1 2 3at 2923.853 kb on - strand, within PfGW456L13_2627at 2925.589 kb on - strand, within PfGW456L13_2628at 2926.752 kb on + strand, within PfGW456L13_2628at 2927.231 kb on + strandat 2927.428 kb on - strandat 2928.223 kb on + strand, within PfGW456L13_2629

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,923,853 - PfGW456L13_2627 0.28 -0.3
2,925,589 - PfGW456L13_2628 0.37 +3.0
2,926,752 + PfGW456L13_2628 0.80 -0.1
2,927,231 + +2.0
2,927,428 - -0.8
2,928,223 + PfGW456L13_2629 0.59 +0.4

Or see this region's nucleotide sequence