Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_171

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_169 and PfGW456L13_170 are separated by 41 nucleotidesPfGW456L13_170 and PfGW456L13_171 are separated by 18 nucleotidesPfGW456L13_171 and PfGW456L13_172 are separated by 128 nucleotides PfGW456L13_169 - Predicted signal transduction protein, at 193,022 to 194,560 _169 PfGW456L13_170 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 194,602 to 195,417 _170 PfGW456L13_171 - Phosphatidylserine decarboxylase (EC 4.1.1.65), at 195,436 to 196,296 _171 PfGW456L13_172 - Phosphoserine phosphatase (EC 3.1.3.3), at 196,425 to 197,639 _172 Position (kb) 195 196 197Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 194.542 kb on + strandat 194.559 kb on - strandat 194.569 kb on - strandat 194.569 kb on - strandat 194.754 kb on + strand, within PfGW456L13_170at 194.851 kb on + strand, within PfGW456L13_170at 194.860 kb on + strand, within PfGW456L13_170at 194.860 kb on + strand, within PfGW456L13_170at 194.860 kb on + strand, within PfGW456L13_170at 194.929 kb on + strand, within PfGW456L13_170at 194.929 kb on + strand, within PfGW456L13_170at 194.929 kb on + strand, within PfGW456L13_170at 194.929 kb on + strand, within PfGW456L13_170at 194.929 kb on + strand, within PfGW456L13_170at 194.929 kb on + strand, within PfGW456L13_170at 194.929 kb on + strand, within PfGW456L13_170at 194.935 kb on + strand, within PfGW456L13_170at 194.935 kb on + strand, within PfGW456L13_170at 194.935 kb on + strand, within PfGW456L13_170at 194.935 kb on + strand, within PfGW456L13_170at 194.935 kb on + strand, within PfGW456L13_170at 194.937 kb on + strand, within PfGW456L13_170at 194.937 kb on + strand, within PfGW456L13_170at 194.937 kb on + strand, within PfGW456L13_170at 194.937 kb on + strand, within PfGW456L13_170at 194.937 kb on + strand, within PfGW456L13_170at 194.937 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 194.939 kb on + strand, within PfGW456L13_170at 195.319 kb on + strand, within PfGW456L13_170at 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.307 kb on + strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.308 kb on - strandat 196.314 kb on - strandat 196.407 kb on + strandat 196.408 kb on - strandat 196.408 kb on - strandat 196.408 kb on - strandat 196.408 kb on - strandat 196.408 kb on - strandat 196.408 kb on - strandat 196.426 kb on + strandat 196.427 kb on - strandat 196.462 kb on + strandat 196.462 kb on + strandat 196.462 kb on + strandat 196.462 kb on + strandat 196.735 kb on + strand, within PfGW456L13_172at 196.735 kb on + strand, within PfGW456L13_172at 196.735 kb on + strand, within PfGW456L13_172at 196.736 kb on - strand, within PfGW456L13_172at 196.736 kb on - strand, within PfGW456L13_172at 196.736 kb on - strand, within PfGW456L13_172at 196.736 kb on - strand, within PfGW456L13_172at 196.774 kb on + strand, within PfGW456L13_172at 196.774 kb on + strand, within PfGW456L13_172at 196.774 kb on + strand, within PfGW456L13_172at 196.774 kb on + strand, within PfGW456L13_172at 196.775 kb on - strand, within PfGW456L13_172at 196.775 kb on - strand, within PfGW456L13_172at 196.808 kb on - strand, within PfGW456L13_172at 196.808 kb on - strand, within PfGW456L13_172at 196.808 kb on - strand, within PfGW456L13_172at 197.275 kb on + strand, within PfGW456L13_172at 197.275 kb on + strand, within PfGW456L13_172at 197.276 kb on - strand, within PfGW456L13_172

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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194,542 + +0.7
194,559 - -0.7
194,569 - +1.6
194,569 - -0.9
194,754 + PfGW456L13_170 0.19 -0.5
194,851 + PfGW456L13_170 0.31 -0.9
194,860 + PfGW456L13_170 0.32 -1.7
194,860 + PfGW456L13_170 0.32 +1.0
194,860 + PfGW456L13_170 0.32 -1.8
194,929 + PfGW456L13_170 0.40 -3.4
194,929 + PfGW456L13_170 0.40 +1.4
194,929 + PfGW456L13_170 0.40 -0.8
194,929 + PfGW456L13_170 0.40 +0.4
194,929 + PfGW456L13_170 0.40 +0.5
194,929 + PfGW456L13_170 0.40 +0.4
194,929 + PfGW456L13_170 0.40 -0.6
194,935 + PfGW456L13_170 0.41 -1.0
194,935 + PfGW456L13_170 0.41 +0.8
194,935 + PfGW456L13_170 0.41 -2.0
194,935 + PfGW456L13_170 0.41 +0.4
194,935 + PfGW456L13_170 0.41 -2.1
194,937 + PfGW456L13_170 0.41 -1.1
194,937 + PfGW456L13_170 0.41 -1.3
194,937 + PfGW456L13_170 0.41 -1.1
194,937 + PfGW456L13_170 0.41 +0.5
194,937 + PfGW456L13_170 0.41 +2.7
194,937 + PfGW456L13_170 0.41 +0.4
194,939 + PfGW456L13_170 0.41 -1.7
194,939 + PfGW456L13_170 0.41 +0.3
194,939 + PfGW456L13_170 0.41 +0.4
194,939 + PfGW456L13_170 0.41 -1.3
194,939 + PfGW456L13_170 0.41 +0.0
194,939 + PfGW456L13_170 0.41 -1.8
194,939 + PfGW456L13_170 0.41 +0.2
194,939 + PfGW456L13_170 0.41 -1.5
194,939 + PfGW456L13_170 0.41 -1.3
194,939 + PfGW456L13_170 0.41 +1.3
194,939 + PfGW456L13_170 0.41 -0.2
194,939 + PfGW456L13_170 0.41 -0.6
194,939 + PfGW456L13_170 0.41 -1.6
194,939 + PfGW456L13_170 0.41 -0.9
194,939 + PfGW456L13_170 0.41 +1.7
194,939 + PfGW456L13_170 0.41 -0.0
194,939 + PfGW456L13_170 0.41 -1.4
194,939 + PfGW456L13_170 0.41 -0.3
194,939 + PfGW456L13_170 0.41 +0.2
194,939 + PfGW456L13_170 0.41 +1.1
194,939 + PfGW456L13_170 0.41 +1.9
194,939 + PfGW456L13_170 0.41 +0.6
194,939 + PfGW456L13_170 0.41 -0.6
194,939 + PfGW456L13_170 0.41 -0.3
194,939 + PfGW456L13_170 0.41 -1.6
194,939 + PfGW456L13_170 0.41 -1.4
194,939 + PfGW456L13_170 0.41 -0.2
194,939 + PfGW456L13_170 0.41 +0.1
194,939 + PfGW456L13_170 0.41 -2.3
194,939 + PfGW456L13_170 0.41 -0.2
194,939 + PfGW456L13_170 0.41 -0.7
195,319 + PfGW456L13_170 0.88 +1.3
196,307 + +2.5
196,307 + +0.7
196,307 + +0.1
196,307 + -1.5
196,307 + -0.1
196,307 + +1.1
196,307 + +0.6
196,307 + +1.1
196,307 + +0.1
196,307 + -0.3
196,307 + -0.3
196,308 - -1.8
196,308 - -0.2
196,308 - +1.5
196,308 - -0.5
196,308 - -1.2
196,308 - +1.7
196,308 - -1.3
196,308 - -0.0
196,308 - +0.3
196,308 - -0.1
196,308 - +0.1
196,308 - -0.1
196,308 - -0.2
196,308 - +2.5
196,308 - +0.9
196,314 - +0.4
196,407 + -1.4
196,408 - -2.4
196,408 - -1.4
196,408 - -2.7
196,408 - -1.5
196,408 - +0.9
196,408 - -2.0
196,426 + +0.6
196,427 - -0.9
196,462 + +0.8
196,462 + -1.3
196,462 + -2.6
196,462 + +1.1
196,735 + PfGW456L13_172 0.26 -3.6
196,735 + PfGW456L13_172 0.26 -2.8
196,735 + PfGW456L13_172 0.26 -3.4
196,736 - PfGW456L13_172 0.26 -1.3
196,736 - PfGW456L13_172 0.26 -3.1
196,736 - PfGW456L13_172 0.26 -1.2
196,736 - PfGW456L13_172 0.26 -2.8
196,774 + PfGW456L13_172 0.29 -3.1
196,774 + PfGW456L13_172 0.29 -2.1
196,774 + PfGW456L13_172 0.29 -2.2
196,774 + PfGW456L13_172 0.29 +0.1
196,775 - PfGW456L13_172 0.29 -1.5
196,775 - PfGW456L13_172 0.29 -2.4
196,808 - PfGW456L13_172 0.32 -1.6
196,808 - PfGW456L13_172 0.32 -2.8
196,808 - PfGW456L13_172 0.32 -4.3
197,275 + PfGW456L13_172 0.70 -1.8
197,275 + PfGW456L13_172 0.70 -1.6
197,276 - PfGW456L13_172 0.70 -2.5

Or see this region's nucleotide sequence