Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4400 and EX28DRAFT_4401 are separated by 399 nucleotides EX28DRAFT_4401 and EX28DRAFT_4402 are separated by 83 nucleotides EX28DRAFT_4402 and EX28DRAFT_4403 are separated by 92 nucleotides
EX28DRAFT_4400: EX28DRAFT_4400 - MIP family channel proteins, at 63,068 to 63,913
_4400
EX28DRAFT_4401: EX28DRAFT_4401 - Uncharacterized protein conserved in bacteria, at 64,313 to 64,552
_4401
EX28DRAFT_4402: EX28DRAFT_4402 - regulator of ribonuclease activity A, at 64,636 to 65,121
_4402
EX28DRAFT_4403: EX28DRAFT_4403 - 1,4-dihydroxy-2-naphthoate prenyltransferase (EC 2.5.1.74), at 65,214 to 66,134
_4403
Position (kb) 64
65 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 63.553 kb on + strand, within EX28DRAFT_4400 at 63.553 kb on + strand, within EX28DRAFT_4400 at 63.587 kb on - strand, within EX28DRAFT_4400 at 63.588 kb on + strand, within EX28DRAFT_4400 at 63.588 kb on + strand, within EX28DRAFT_4400 at 63.589 kb on - strand, within EX28DRAFT_4400 at 63.591 kb on + strand, within EX28DRAFT_4400 at 63.592 kb on - strand, within EX28DRAFT_4400 at 63.600 kb on + strand, within EX28DRAFT_4400 at 63.656 kb on + strand, within EX28DRAFT_4400 at 63.657 kb on - strand, within EX28DRAFT_4400 at 63.657 kb on - strand, within EX28DRAFT_4400 at 63.744 kb on + strand, within EX28DRAFT_4400 at 63.744 kb on + strand, within EX28DRAFT_4400 at 63.744 kb on + strand, within EX28DRAFT_4400 at 63.745 kb on - strand, within EX28DRAFT_4400 at 63.778 kb on + strand, within EX28DRAFT_4400 at 63.893 kb on + strand at 63.948 kb on - strand at 63.948 kb on - strand at 63.988 kb on - strand at 63.988 kb on - strand at 64.152 kb on + strand at 64.152 kb on + strand at 64.153 kb on - strand at 64.153 kb on - strand at 64.154 kb on + strand at 64.155 kb on - strand at 64.155 kb on - strand at 64.243 kb on + strand at 64.243 kb on + strand at 64.244 kb on - strand at 64.244 kb on - strand at 64.244 kb on - strand at 64.255 kb on + strand at 64.256 kb on - strand at 64.257 kb on + strand at 64.257 kb on + strand at 64.257 kb on + strand at 64.257 kb on + strand at 64.258 kb on - strand at 64.258 kb on - strand at 64.273 kb on - strand at 64.273 kb on - strand at 64.306 kb on + strand at 64.306 kb on + strand at 64.307 kb on - strand at 64.307 kb on - strand at 64.320 kb on + strand at 64.321 kb on - strand at 64.537 kb on + strand at 64.567 kb on + strand at 64.567 kb on + strand at 64.578 kb on + strand at 64.578 kb on + strand at 64.579 kb on - strand at 64.637 kb on + strand at 64.638 kb on - strand at 64.688 kb on + strand, within EX28DRAFT_4402 at 64.688 kb on + strand, within EX28DRAFT_4402 at 64.689 kb on - strand, within EX28DRAFT_4402 at 64.903 kb on + strand, within EX28DRAFT_4402 at 64.903 kb on + strand, within EX28DRAFT_4402 at 64.904 kb on - strand, within EX28DRAFT_4402 at 64.976 kb on + strand, within EX28DRAFT_4402 at 64.977 kb on - strand, within EX28DRAFT_4402 at 65.087 kb on + strand at 65.088 kb on - strand at 65.115 kb on - strand at 65.156 kb on + strand at 65.156 kb on + strand at 65.157 kb on - strand at 65.158 kb on + strand at 65.159 kb on - strand at 65.159 kb on - strand at 65.215 kb on + strand at 65.319 kb on - strand, within EX28DRAFT_4403
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 63,553 + EX28DRAFT_4400 0.57 +3.8 63,553 + EX28DRAFT_4400 0.57 -1.9 63,587 - EX28DRAFT_4400 0.61 +0.7 63,588 + EX28DRAFT_4400 0.61 +1.4 63,588 + EX28DRAFT_4400 0.61 +0.4 63,589 - EX28DRAFT_4400 0.62 +0.8 63,591 + EX28DRAFT_4400 0.62 +0.6 63,592 - EX28DRAFT_4400 0.62 -1.3 63,600 + EX28DRAFT_4400 0.63 +2.0 63,656 + EX28DRAFT_4400 0.70 -0.3 63,657 - EX28DRAFT_4400 0.70 -0.1 63,657 - EX28DRAFT_4400 0.70 +0.3 63,744 + EX28DRAFT_4400 0.80 -0.8 63,744 + EX28DRAFT_4400 0.80 +1.8 63,744 + EX28DRAFT_4400 0.80 +0.1 63,745 - EX28DRAFT_4400 0.80 -1.6 63,778 + EX28DRAFT_4400 0.84 -0.2 63,893 + +0.0 63,948 - +0.6 63,948 - -2.1 63,988 - +0.1 63,988 - +0.5 64,152 + +0.4 64,152 + +0.7 64,153 - -0.7 64,153 - -0.5 64,154 + +0.7 64,155 - +0.6 64,155 - +0.5 64,243 + -2.0 64,243 + +1.4 64,244 - +1.4 64,244 - -0.2 64,244 - +0.8 64,255 + +0.9 64,256 - +0.6 64,257 + -0.1 64,257 + +0.9 64,257 + -0.4 64,257 + -0.4 64,258 - -0.0 64,258 - -1.9 64,273 - -0.9 64,273 - -2.6 64,306 + +1.4 64,306 + +0.7 64,307 - -2.1 64,307 - +0.0 64,320 + +0.6 64,321 - +0.4 64,537 + +0.4 64,567 + +0.7 64,567 + +0.9 64,578 + -0.1 64,578 + +1.3 64,579 - -0.2 64,637 + -1.0 64,638 - -2.1 64,688 + EX28DRAFT_4402 0.11 -1.7 64,688 + EX28DRAFT_4402 0.11 +1.1 64,689 - EX28DRAFT_4402 0.11 +0.2 64,903 + EX28DRAFT_4402 0.55 +0.4 64,903 + EX28DRAFT_4402 0.55 +0.8 64,904 - EX28DRAFT_4402 0.55 +0.7 64,976 + EX28DRAFT_4402 0.70 -2.6 64,977 - EX28DRAFT_4402 0.70 +0.8 65,087 + +0.1 65,088 - -1.9 65,115 - +2.3 65,156 + +0.6 65,156 + +0.7 65,157 - +0.7 65,158 + -0.8 65,159 - -1.2 65,159 - +0.2 65,215 + +0.1 65,319 - EX28DRAFT_4403 0.11 -1.0
Or see this region's nucleotide sequence