Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4326

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4325 and EX28DRAFT_4326 are separated by 116 nucleotidesEX28DRAFT_4326 and EX28DRAFT_4327 are separated by 193 nucleotides EX28DRAFT_4325: EX28DRAFT_4325 - Na/Pi-cotransporter, at 128,300 to 129,931 _4325 EX28DRAFT_4326: EX28DRAFT_4326 - methionine synthase (B12-dependent) (EC 2.1.1.13), at 130,048 to 133,731 _4326 EX28DRAFT_4327: EX28DRAFT_4327 - transcriptional regulator, IclR family, at 133,925 to 134,755 _4327 Position (kb) 130 131 132 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 129.102 kb on + strand, within EX28DRAFT_4325at 129.197 kb on - strand, within EX28DRAFT_4325at 129.250 kb on + strand, within EX28DRAFT_4325at 129.251 kb on - strand, within EX28DRAFT_4325at 129.375 kb on + strand, within EX28DRAFT_4325at 129.375 kb on + strand, within EX28DRAFT_4325at 129.528 kb on - strand, within EX28DRAFT_4325at 129.584 kb on - strand, within EX28DRAFT_4325at 129.656 kb on - strand, within EX28DRAFT_4325at 129.659 kb on + strand, within EX28DRAFT_4325at 129.659 kb on + strand, within EX28DRAFT_4325at 129.659 kb on + strand, within EX28DRAFT_4325at 129.659 kb on + strand, within EX28DRAFT_4325at 129.660 kb on - strand, within EX28DRAFT_4325at 129.660 kb on - strand, within EX28DRAFT_4325at 129.771 kb on - strandat 129.830 kb on - strandat 129.834 kb on - strandat 129.917 kb on + strandat 129.917 kb on + strandat 129.918 kb on - strandat 129.968 kb on - strandat 129.976 kb on + strandat 129.979 kb on - strandat 129.979 kb on - strandat 129.992 kb on + strandat 129.992 kb on + strandat 130.034 kb on - strandat 130.167 kb on - strandat 130.191 kb on - strandat 130.191 kb on - strandat 130.343 kb on + strandat 130.427 kb on + strand, within EX28DRAFT_4326at 130.428 kb on - strand, within EX28DRAFT_4326at 130.479 kb on + strand, within EX28DRAFT_4326at 130.479 kb on + strand, within EX28DRAFT_4326at 130.563 kb on - strand, within EX28DRAFT_4326at 130.563 kb on - strand, within EX28DRAFT_4326at 130.563 kb on - strand, within EX28DRAFT_4326at 130.573 kb on - strand, within EX28DRAFT_4326at 130.611 kb on - strand, within EX28DRAFT_4326at 130.691 kb on + strand, within EX28DRAFT_4326at 130.853 kb on + strand, within EX28DRAFT_4326at 130.901 kb on + strand, within EX28DRAFT_4326at 130.901 kb on + strand, within EX28DRAFT_4326at 130.902 kb on - strand, within EX28DRAFT_4326at 130.902 kb on - strand, within EX28DRAFT_4326at 131.165 kb on + strand, within EX28DRAFT_4326at 131.183 kb on + strand, within EX28DRAFT_4326at 131.183 kb on + strand, within EX28DRAFT_4326at 131.184 kb on - strand, within EX28DRAFT_4326at 131.253 kb on + strand, within EX28DRAFT_4326at 131.311 kb on - strand, within EX28DRAFT_4326at 131.409 kb on - strand, within EX28DRAFT_4326at 131.412 kb on + strand, within EX28DRAFT_4326at 131.412 kb on + strand, within EX28DRAFT_4326at 131.412 kb on + strand, within EX28DRAFT_4326at 131.413 kb on - strand, within EX28DRAFT_4326at 131.415 kb on + strand, within EX28DRAFT_4326at 131.528 kb on + strand, within EX28DRAFT_4326at 131.528 kb on + strand, within EX28DRAFT_4326at 131.528 kb on + strand, within EX28DRAFT_4326at 131.529 kb on - strand, within EX28DRAFT_4326at 131.541 kb on - strand, within EX28DRAFT_4326at 131.819 kb on + strand, within EX28DRAFT_4326at 131.975 kb on + strand, within EX28DRAFT_4326at 131.978 kb on + strand, within EX28DRAFT_4326at 132.174 kb on + strand, within EX28DRAFT_4326at 132.174 kb on + strand, within EX28DRAFT_4326at 132.218 kb on + strand, within EX28DRAFT_4326at 132.219 kb on - strand, within EX28DRAFT_4326at 132.339 kb on + strand, within EX28DRAFT_4326at 132.340 kb on - strand, within EX28DRAFT_4326at 132.642 kb on + strand, within EX28DRAFT_4326at 132.643 kb on - strand, within EX28DRAFT_4326at 132.646 kb on - strand, within EX28DRAFT_4326at 132.646 kb on - strand, within EX28DRAFT_4326at 132.772 kb on - strand, within EX28DRAFT_4326at 132.930 kb on - strand, within EX28DRAFT_4326at 132.958 kb on + strand, within EX28DRAFT_4326at 132.958 kb on + strand, within EX28DRAFT_4326at 132.959 kb on - strand, within EX28DRAFT_4326at 132.959 kb on - strand, within EX28DRAFT_4326at 132.959 kb on - strand, within EX28DRAFT_4326at 132.963 kb on - strand, within EX28DRAFT_4326at 133.035 kb on + strand, within EX28DRAFT_4326at 133.037 kb on + strand, within EX28DRAFT_4326at 133.037 kb on + strand, within EX28DRAFT_4326at 133.038 kb on - strand, within EX28DRAFT_4326at 133.272 kb on + strand, within EX28DRAFT_4326at 133.273 kb on - strand, within EX28DRAFT_4326at 133.480 kb on - strandat 133.540 kb on - strandat 133.540 kb on - strandat 133.717 kb on + strandat 133.718 kb on - strandat 133.718 kb on - strandat 134.365 kb on + strand, within EX28DRAFT_4327at 134.366 kb on - strand, within EX28DRAFT_4327at 134.486 kb on + strand, within EX28DRAFT_4327at 134.487 kb on - strand, within EX28DRAFT_4327

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
remove
129,102 + EX28DRAFT_4325 0.49 -0.7
129,197 - EX28DRAFT_4325 0.55 +2.2
129,250 + EX28DRAFT_4325 0.58 +0.1
129,251 - EX28DRAFT_4325 0.58 +0.1
129,375 + EX28DRAFT_4325 0.66 -0.5
129,375 + EX28DRAFT_4325 0.66 +0.1
129,528 - EX28DRAFT_4325 0.75 -1.5
129,584 - EX28DRAFT_4325 0.79 -1.2
129,656 - EX28DRAFT_4325 0.83 +0.6
129,659 + EX28DRAFT_4325 0.83 +1.1
129,659 + EX28DRAFT_4325 0.83 +0.2
129,659 + EX28DRAFT_4325 0.83 -0.8
129,659 + EX28DRAFT_4325 0.83 +0.4
129,660 - EX28DRAFT_4325 0.83 -1.3
129,660 - EX28DRAFT_4325 0.83 -0.2
129,771 - -0.1
129,830 - +0.3
129,834 - -0.7
129,917 + -0.9
129,917 + -1.2
129,918 - -1.3
129,968 - +0.0
129,976 + -2.4
129,979 - -0.3
129,979 - -2.0
129,992 + +0.9
129,992 + +2.6
130,034 - -0.4
130,167 - +0.3
130,191 - -0.6
130,191 - -0.2
130,343 + -0.8
130,427 + EX28DRAFT_4326 0.10 -0.5
130,428 - EX28DRAFT_4326 0.10 +1.9
130,479 + EX28DRAFT_4326 0.12 -2.0
130,479 + EX28DRAFT_4326 0.12 -0.3
130,563 - EX28DRAFT_4326 0.14 +0.6
130,563 - EX28DRAFT_4326 0.14 -1.2
130,563 - EX28DRAFT_4326 0.14 +1.8
130,573 - EX28DRAFT_4326 0.14 -0.4
130,611 - EX28DRAFT_4326 0.15 +0.5
130,691 + EX28DRAFT_4326 0.17 +0.3
130,853 + EX28DRAFT_4326 0.22 -0.0
130,901 + EX28DRAFT_4326 0.23 +0.6
130,901 + EX28DRAFT_4326 0.23 +0.2
130,902 - EX28DRAFT_4326 0.23 -0.1
130,902 - EX28DRAFT_4326 0.23 -0.7
131,165 + EX28DRAFT_4326 0.30 +0.2
131,183 + EX28DRAFT_4326 0.31 -0.7
131,183 + EX28DRAFT_4326 0.31 +1.0
131,184 - EX28DRAFT_4326 0.31 -0.0
131,253 + EX28DRAFT_4326 0.33 -1.8
131,311 - EX28DRAFT_4326 0.34 +0.3
131,409 - EX28DRAFT_4326 0.37 -0.8
131,412 + EX28DRAFT_4326 0.37 -1.0
131,412 + EX28DRAFT_4326 0.37 -1.0
131,412 + EX28DRAFT_4326 0.37 -0.4
131,413 - EX28DRAFT_4326 0.37 -0.8
131,415 + EX28DRAFT_4326 0.37 -0.7
131,528 + EX28DRAFT_4326 0.40 -0.3
131,528 + EX28DRAFT_4326 0.40 +0.7
131,528 + EX28DRAFT_4326 0.40 +0.9
131,529 - EX28DRAFT_4326 0.40 +0.6
131,541 - EX28DRAFT_4326 0.41 -1.0
131,819 + EX28DRAFT_4326 0.48 -1.2
131,975 + EX28DRAFT_4326 0.52 -1.0
131,978 + EX28DRAFT_4326 0.52 -0.7
132,174 + EX28DRAFT_4326 0.58 -1.1
132,174 + EX28DRAFT_4326 0.58 -0.0
132,218 + EX28DRAFT_4326 0.59 -1.8
132,219 - EX28DRAFT_4326 0.59 -0.1
132,339 + EX28DRAFT_4326 0.62 -0.7
132,340 - EX28DRAFT_4326 0.62 -1.4
132,642 + EX28DRAFT_4326 0.70 -0.7
132,643 - EX28DRAFT_4326 0.70 -1.3
132,646 - EX28DRAFT_4326 0.71 +0.4
132,646 - EX28DRAFT_4326 0.71 -2.0
132,772 - EX28DRAFT_4326 0.74 +0.2
132,930 - EX28DRAFT_4326 0.78 +0.3
132,958 + EX28DRAFT_4326 0.79 -0.9
132,958 + EX28DRAFT_4326 0.79 -0.7
132,959 - EX28DRAFT_4326 0.79 -0.1
132,959 - EX28DRAFT_4326 0.79 -0.5
132,959 - EX28DRAFT_4326 0.79 -0.7
132,963 - EX28DRAFT_4326 0.79 +0.3
133,035 + EX28DRAFT_4326 0.81 -0.6
133,037 + EX28DRAFT_4326 0.81 +0.2
133,037 + EX28DRAFT_4326 0.81 -1.1
133,038 - EX28DRAFT_4326 0.81 +0.3
133,272 + EX28DRAFT_4326 0.88 +0.4
133,273 - EX28DRAFT_4326 0.88 -1.8
133,480 - -1.3
133,540 - +0.4
133,540 - -0.6
133,717 + -1.7
133,718 - +0.0
133,718 - -0.5
134,365 + EX28DRAFT_4327 0.53 +0.1
134,366 - EX28DRAFT_4327 0.53 -3.4
134,486 + EX28DRAFT_4327 0.68 -1.0
134,487 - EX28DRAFT_4327 0.68 -2.8

Or see this region's nucleotide sequence