Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4187

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4184 and EX28DRAFT_4185 overlap by 1 nucleotidesEX28DRAFT_4185 and EX28DRAFT_4186 overlap by 1 nucleotidesEX28DRAFT_4186 and EX28DRAFT_4187 are separated by 7 nucleotidesEX28DRAFT_4187 and EX28DRAFT_4188 are separated by 124 nucleotidesEX28DRAFT_4188 and EX28DRAFT_4189 are separated by 96 nucleotides EX28DRAFT_4184: EX28DRAFT_4184 - Uncharacterized protein conserved in bacteria, at 166,739 to 167,461 _4184 EX28DRAFT_4185: EX28DRAFT_4185 - sulfur relay protein TusD/DsrE, at 167,461 to 167,847 _4185 EX28DRAFT_4186: EX28DRAFT_4186 - sulfur relay protein TusC/DsrF, at 167,847 to 168,206 _4186 EX28DRAFT_4187: EX28DRAFT_4187 - sulfur relay protein TusB/DsrH, at 168,214 to 168,501 _4187 EX28DRAFT_4188: EX28DRAFT_4188 - ribosomal protein S12, bacterial/organelle, at 168,626 to 169,000 _4188 EX28DRAFT_4189: EX28DRAFT_4189 - ribosomal protein S7, bacterial/organelle, at 169,097 to 169,567 _4189 Position (kb) 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 167.330 kb on + strand, within EX28DRAFT_4184at 167.408 kb on + strandat 167.414 kb on + strandat 167.416 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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167,330 + EX28DRAFT_4184 0.82 -3.0
167,408 + +0.4
167,414 + +3.1
167,416 + +0.4

Or see this region's nucleotide sequence