Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4080

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4078 and EX28DRAFT_4079 are separated by 5 nucleotidesEX28DRAFT_4079 and EX28DRAFT_4080 are separated by 32 nucleotidesEX28DRAFT_4080 and EX28DRAFT_4081 are separated by 99 nucleotides EX28DRAFT_4078: EX28DRAFT_4078 - NlpC/P60 family, at 53,222 to 53,659 _4078 EX28DRAFT_4079: EX28DRAFT_4079 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 53,665 to 54,459 _4079 EX28DRAFT_4080: EX28DRAFT_4080 - Transcriptional regulator, at 54,492 to 55,373 _4080 EX28DRAFT_4081: EX28DRAFT_4081 - Phenolic acid decarboxylase, at 55,473 to 55,979 _4081 Position (kb) 54 55 56Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 53.534 kb on + strand, within EX28DRAFT_4078at 53.534 kb on + strand, within EX28DRAFT_4078at 53.534 kb on + strand, within EX28DRAFT_4078at 53.535 kb on - strand, within EX28DRAFT_4078at 53.535 kb on - strand, within EX28DRAFT_4078at 53.535 kb on - strand, within EX28DRAFT_4078at 53.537 kb on - strand, within EX28DRAFT_4078at 53.554 kb on + strand, within EX28DRAFT_4078at 53.554 kb on + strand, within EX28DRAFT_4078at 53.555 kb on - strand, within EX28DRAFT_4078at 53.621 kb on + strandat 53.621 kb on + strandat 53.621 kb on + strandat 53.621 kb on + strandat 53.621 kb on + strandat 53.622 kb on - strandat 53.622 kb on - strandat 53.622 kb on - strandat 53.671 kb on - strandat 53.744 kb on + strandat 53.745 kb on - strand, within EX28DRAFT_4079at 53.745 kb on - strand, within EX28DRAFT_4079at 53.745 kb on - strand, within EX28DRAFT_4079at 53.755 kb on - strand, within EX28DRAFT_4079at 54.010 kb on - strand, within EX28DRAFT_4079at 54.022 kb on - strand, within EX28DRAFT_4079at 54.079 kb on - strand, within EX28DRAFT_4079at 54.164 kb on + strand, within EX28DRAFT_4079at 54.164 kb on + strand, within EX28DRAFT_4079at 54.165 kb on - strand, within EX28DRAFT_4079at 54.182 kb on + strand, within EX28DRAFT_4079at 54.287 kb on - strand, within EX28DRAFT_4079at 54.581 kb on + strand, within EX28DRAFT_4080at 55.015 kb on + strand, within EX28DRAFT_4080at 55.040 kb on + strand, within EX28DRAFT_4080at 55.086 kb on + strand, within EX28DRAFT_4080at 55.087 kb on - strand, within EX28DRAFT_4080at 55.087 kb on - strand, within EX28DRAFT_4080at 55.264 kb on + strand, within EX28DRAFT_4080at 55.264 kb on + strand, within EX28DRAFT_4080at 55.265 kb on - strand, within EX28DRAFT_4080at 55.265 kb on - strand, within EX28DRAFT_4080at 55.265 kb on - strand, within EX28DRAFT_4080at 55.265 kb on - strand, within EX28DRAFT_4080at 55.341 kb on + strandat 55.473 kb on - strandat 55.473 kb on - strandat 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.525 kb on + strand, within EX28DRAFT_4081at 55.526 kb on - strand, within EX28DRAFT_4081at 55.526 kb on - strand, within EX28DRAFT_4081at 55.526 kb on - strand, within EX28DRAFT_4081at 55.526 kb on - strand, within EX28DRAFT_4081at 55.526 kb on - strand, within EX28DRAFT_4081at 55.527 kb on + strand, within EX28DRAFT_4081at 55.527 kb on + strand, within EX28DRAFT_4081at 55.527 kb on + strand, within EX28DRAFT_4081at 55.528 kb on - strand, within EX28DRAFT_4081at 55.528 kb on - strand, within EX28DRAFT_4081at 55.528 kb on - strand, within EX28DRAFT_4081at 55.528 kb on - strand, within EX28DRAFT_4081at 55.529 kb on + strand, within EX28DRAFT_4081at 55.529 kb on + strand, within EX28DRAFT_4081at 55.529 kb on + strand, within EX28DRAFT_4081at 55.529 kb on + strand, within EX28DRAFT_4081at 55.530 kb on - strand, within EX28DRAFT_4081at 55.533 kb on + strand, within EX28DRAFT_4081at 55.534 kb on - strand, within EX28DRAFT_4081at 55.551 kb on + strand, within EX28DRAFT_4081at 55.577 kb on + strand, within EX28DRAFT_4081at 55.577 kb on + strand, within EX28DRAFT_4081at 55.578 kb on - strand, within EX28DRAFT_4081at 55.641 kb on + strand, within EX28DRAFT_4081at 55.641 kb on + strand, within EX28DRAFT_4081at 55.641 kb on + strand, within EX28DRAFT_4081at 55.642 kb on - strand, within EX28DRAFT_4081at 55.642 kb on - strand, within EX28DRAFT_4081at 55.643 kb on + strand, within EX28DRAFT_4081at 55.643 kb on + strand, within EX28DRAFT_4081at 55.644 kb on - strand, within EX28DRAFT_4081at 55.644 kb on - strand, within EX28DRAFT_4081at 55.670 kb on + strand, within EX28DRAFT_4081at 55.826 kb on + strand, within EX28DRAFT_4081at 55.827 kb on - strand, within EX28DRAFT_4081at 55.827 kb on - strand, within EX28DRAFT_4081at 55.967 kb on + strandat 56.098 kb on - strandat 56.123 kb on - strandat 56.171 kb on - strandat 56.216 kb on + strandat 56.216 kb on + strandat 56.306 kb on + strandat 56.324 kb on - strandat 56.347 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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53,534 + EX28DRAFT_4078 0.71 +0.5
53,534 + EX28DRAFT_4078 0.71 +0.0
53,534 + EX28DRAFT_4078 0.71 +1.5
53,535 - EX28DRAFT_4078 0.71 -0.7
53,535 - EX28DRAFT_4078 0.71 +1.0
53,535 - EX28DRAFT_4078 0.71 -0.4
53,537 - EX28DRAFT_4078 0.72 +1.0
53,554 + EX28DRAFT_4078 0.76 +0.9
53,554 + EX28DRAFT_4078 0.76 +0.2
53,555 - EX28DRAFT_4078 0.76 -0.2
53,621 + -2.2
53,621 + +0.1
53,621 + +0.9
53,621 + -0.1
53,621 + +0.5
53,622 - -0.8
53,622 - -0.1
53,622 - +0.6
53,671 - -2.7
53,744 + -0.2
53,745 - EX28DRAFT_4079 0.10 +1.1
53,745 - EX28DRAFT_4079 0.10 -0.3
53,745 - EX28DRAFT_4079 0.10 -1.3
53,755 - EX28DRAFT_4079 0.11 -1.6
54,010 - EX28DRAFT_4079 0.43 +0.2
54,022 - EX28DRAFT_4079 0.45 +0.2
54,079 - EX28DRAFT_4079 0.52 +0.5
54,164 + EX28DRAFT_4079 0.63 -0.1
54,164 + EX28DRAFT_4079 0.63 +0.3
54,165 - EX28DRAFT_4079 0.63 +0.3
54,182 + EX28DRAFT_4079 0.65 -1.9
54,287 - EX28DRAFT_4079 0.78 -0.3
54,581 + EX28DRAFT_4080 0.10 +2.8
55,015 + EX28DRAFT_4080 0.59 -0.4
55,040 + EX28DRAFT_4080 0.62 +0.2
55,086 + EX28DRAFT_4080 0.67 +1.3
55,087 - EX28DRAFT_4080 0.67 -0.9
55,087 - EX28DRAFT_4080 0.67 -0.5
55,264 + EX28DRAFT_4080 0.88 +0.1
55,264 + EX28DRAFT_4080 0.88 +0.4
55,265 - EX28DRAFT_4080 0.88 +0.4
55,265 - EX28DRAFT_4080 0.88 +1.9
55,265 - EX28DRAFT_4080 0.88 +1.1
55,265 - EX28DRAFT_4080 0.88 -0.4
55,341 + +0.2
55,473 - -0.8
55,473 - +0.1
55,525 + EX28DRAFT_4081 0.10 -3.8
55,525 + EX28DRAFT_4081 0.10 +0.4
55,525 + EX28DRAFT_4081 0.10 +1.0
55,525 + EX28DRAFT_4081 0.10 -0.8
55,525 + EX28DRAFT_4081 0.10 -0.5
55,525 + EX28DRAFT_4081 0.10 -0.8
55,525 + EX28DRAFT_4081 0.10 +0.5
55,526 - EX28DRAFT_4081 0.10 +1.3
55,526 - EX28DRAFT_4081 0.10 +2.0
55,526 - EX28DRAFT_4081 0.10 +1.2
55,526 - EX28DRAFT_4081 0.10 -1.3
55,526 - EX28DRAFT_4081 0.10 -0.2
55,527 + EX28DRAFT_4081 0.11 -0.5
55,527 + EX28DRAFT_4081 0.11 +0.2
55,527 + EX28DRAFT_4081 0.11 +0.9
55,528 - EX28DRAFT_4081 0.11 +0.1
55,528 - EX28DRAFT_4081 0.11 -0.5
55,528 - EX28DRAFT_4081 0.11 -1.2
55,528 - EX28DRAFT_4081 0.11 -1.8
55,529 + EX28DRAFT_4081 0.11 -0.9
55,529 + EX28DRAFT_4081 0.11 -0.5
55,529 + EX28DRAFT_4081 0.11 -3.2
55,529 + EX28DRAFT_4081 0.11 -0.0
55,530 - EX28DRAFT_4081 0.11 -1.4
55,533 + EX28DRAFT_4081 0.12 -0.1
55,534 - EX28DRAFT_4081 0.12 -0.1
55,551 + EX28DRAFT_4081 0.15 -1.9
55,577 + EX28DRAFT_4081 0.21 -1.6
55,577 + EX28DRAFT_4081 0.21 -3.1
55,578 - EX28DRAFT_4081 0.21 -0.2
55,641 + EX28DRAFT_4081 0.33 -0.2
55,641 + EX28DRAFT_4081 0.33 +0.3
55,641 + EX28DRAFT_4081 0.33 +0.7
55,642 - EX28DRAFT_4081 0.33 -0.3
55,642 - EX28DRAFT_4081 0.33 -2.0
55,643 + EX28DRAFT_4081 0.34 +0.6
55,643 + EX28DRAFT_4081 0.34 -1.4
55,644 - EX28DRAFT_4081 0.34 +0.8
55,644 - EX28DRAFT_4081 0.34 -0.7
55,670 + EX28DRAFT_4081 0.39 +0.9
55,826 + EX28DRAFT_4081 0.70 -0.1
55,827 - EX28DRAFT_4081 0.70 -0.4
55,827 - EX28DRAFT_4081 0.70 +0.8
55,967 + -0.5
56,098 - +3.2
56,123 - -1.6
56,171 - -1.2
56,216 + -1.0
56,216 + -0.4
56,306 + +0.3
56,324 - -4.5
56,347 + -0.4

Or see this region's nucleotide sequence