Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3833

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3832 and EX28DRAFT_3833 overlap by 23 nucleotidesEX28DRAFT_3833 and EX28DRAFT_3834 are separated by 33 nucleotides EX28DRAFT_3832: EX28DRAFT_3832 - D-xylose ABC transporter, ATP-binding protein, at 37,108 to 38,649 _3832 EX28DRAFT_3833: EX28DRAFT_3833 - ABC-type xylose transport system, permease component, at 38,627 to 39,808 _3833 EX28DRAFT_3834: EX28DRAFT_3834 - Transcriptional regulators, at 39,842 to 41,020 _3834 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 37.657 kb on - strand, within EX28DRAFT_3832at 37.692 kb on + strand, within EX28DRAFT_3832at 37.693 kb on - strand, within EX28DRAFT_3832at 37.697 kb on - strand, within EX28DRAFT_3832at 37.697 kb on - strand, within EX28DRAFT_3832at 37.836 kb on - strand, within EX28DRAFT_3832at 38.018 kb on + strand, within EX28DRAFT_3832at 38.018 kb on + strand, within EX28DRAFT_3832at 38.019 kb on - strand, within EX28DRAFT_3832at 38.065 kb on + strand, within EX28DRAFT_3832at 38.384 kb on + strand, within EX28DRAFT_3832at 38.384 kb on + strand, within EX28DRAFT_3832at 38.385 kb on - strand, within EX28DRAFT_3832at 38.385 kb on - strand, within EX28DRAFT_3832at 38.387 kb on + strand, within EX28DRAFT_3832at 38.431 kb on + strand, within EX28DRAFT_3832at 38.612 kb on + strandat 38.778 kb on - strand, within EX28DRAFT_3833at 38.781 kb on + strand, within EX28DRAFT_3833at 38.782 kb on - strand, within EX28DRAFT_3833at 39.164 kb on - strand, within EX28DRAFT_3833at 39.164 kb on - strand, within EX28DRAFT_3833at 39.175 kb on + strand, within EX28DRAFT_3833at 39.330 kb on + strand, within EX28DRAFT_3833at 39.379 kb on - strand, within EX28DRAFT_3833at 39.397 kb on + strand, within EX28DRAFT_3833at 39.427 kb on + strand, within EX28DRAFT_3833at 39.431 kb on + strand, within EX28DRAFT_3833at 39.431 kb on + strand, within EX28DRAFT_3833at 39.431 kb on + strand, within EX28DRAFT_3833at 39.682 kb on + strand, within EX28DRAFT_3833at 39.682 kb on + strand, within EX28DRAFT_3833at 39.682 kb on + strand, within EX28DRAFT_3833at 39.682 kb on + strand, within EX28DRAFT_3833at 39.682 kb on + strand, within EX28DRAFT_3833at 39.682 kb on + strand, within EX28DRAFT_3833at 39.683 kb on - strand, within EX28DRAFT_3833at 39.683 kb on - strand, within EX28DRAFT_3833at 39.683 kb on - strand, within EX28DRAFT_3833at 39.712 kb on + strandat 39.712 kb on + strandat 39.713 kb on - strandat 39.740 kb on + strandat 39.740 kb on + strandat 39.766 kb on - strandat 39.816 kb on - strandat 39.816 kb on - strandat 39.825 kb on + strandat 39.826 kb on - strandat 39.865 kb on + strandat 39.865 kb on + strandat 39.866 kb on - strandat 39.874 kb on - strandat 39.886 kb on + strandat 39.894 kb on - strandat 39.926 kb on + strandat 39.926 kb on + strandat 40.133 kb on + strand, within EX28DRAFT_3834at 40.133 kb on + strand, within EX28DRAFT_3834at 40.133 kb on + strand, within EX28DRAFT_3834at 40.133 kb on + strand, within EX28DRAFT_3834at 40.134 kb on - strand, within EX28DRAFT_3834at 40.135 kb on + strand, within EX28DRAFT_3834at 40.136 kb on - strand, within EX28DRAFT_3834at 40.183 kb on - strand, within EX28DRAFT_3834at 40.402 kb on + strand, within EX28DRAFT_3834at 40.455 kb on + strand, within EX28DRAFT_3834at 40.455 kb on + strand, within EX28DRAFT_3834at 40.718 kb on + strand, within EX28DRAFT_3834at 40.720 kb on + strand, within EX28DRAFT_3834at 40.747 kb on + strand, within EX28DRAFT_3834at 40.747 kb on + strand, within EX28DRAFT_3834

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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37,657 - EX28DRAFT_3832 0.36 +0.7
37,692 + EX28DRAFT_3832 0.38 -1.7
37,693 - EX28DRAFT_3832 0.38 +1.0
37,697 - EX28DRAFT_3832 0.38 +0.4
37,697 - EX28DRAFT_3832 0.38 -0.0
37,836 - EX28DRAFT_3832 0.47 -0.6
38,018 + EX28DRAFT_3832 0.59 +0.6
38,018 + EX28DRAFT_3832 0.59 -0.1
38,019 - EX28DRAFT_3832 0.59 +0.5
38,065 + EX28DRAFT_3832 0.62 -1.1
38,384 + EX28DRAFT_3832 0.83 +0.2
38,384 + EX28DRAFT_3832 0.83 -0.4
38,385 - EX28DRAFT_3832 0.83 +0.8
38,385 - EX28DRAFT_3832 0.83 +0.1
38,387 + EX28DRAFT_3832 0.83 -0.0
38,431 + EX28DRAFT_3832 0.86 +0.5
38,612 + +0.7
38,778 - EX28DRAFT_3833 0.13 +1.0
38,781 + EX28DRAFT_3833 0.13 +0.3
38,782 - EX28DRAFT_3833 0.13 +0.3
39,164 - EX28DRAFT_3833 0.45 +0.6
39,164 - EX28DRAFT_3833 0.45 +0.7
39,175 + EX28DRAFT_3833 0.46 +0.4
39,330 + EX28DRAFT_3833 0.59 -0.2
39,379 - EX28DRAFT_3833 0.64 +0.1
39,397 + EX28DRAFT_3833 0.65 +1.0
39,427 + EX28DRAFT_3833 0.68 +0.6
39,431 + EX28DRAFT_3833 0.68 -0.1
39,431 + EX28DRAFT_3833 0.68 +0.6
39,431 + EX28DRAFT_3833 0.68 +0.8
39,682 + EX28DRAFT_3833 0.89 +0.8
39,682 + EX28DRAFT_3833 0.89 +0.0
39,682 + EX28DRAFT_3833 0.89 -0.4
39,682 + EX28DRAFT_3833 0.89 -0.9
39,682 + EX28DRAFT_3833 0.89 +0.4
39,682 + EX28DRAFT_3833 0.89 +0.1
39,683 - EX28DRAFT_3833 0.89 +0.4
39,683 - EX28DRAFT_3833 0.89 -0.2
39,683 - EX28DRAFT_3833 0.89 -0.2
39,712 + +0.4
39,712 + +0.6
39,713 - +0.1
39,740 + +0.9
39,740 + +0.5
39,766 - +0.3
39,816 - -0.8
39,816 - +0.8
39,825 + -1.5
39,826 - -0.1
39,865 + -0.8
39,865 + +0.9
39,866 - -0.0
39,874 - +0.3
39,886 + -0.2
39,894 - -0.7
39,926 + -1.9
39,926 + +0.9
40,133 + EX28DRAFT_3834 0.25 +1.1
40,133 + EX28DRAFT_3834 0.25 -0.2
40,133 + EX28DRAFT_3834 0.25 +0.6
40,133 + EX28DRAFT_3834 0.25 -2.3
40,134 - EX28DRAFT_3834 0.25 -0.2
40,135 + EX28DRAFT_3834 0.25 +4.3
40,136 - EX28DRAFT_3834 0.25 -0.9
40,183 - EX28DRAFT_3834 0.29 +0.3
40,402 + EX28DRAFT_3834 0.47 +0.7
40,455 + EX28DRAFT_3834 0.52 -0.6
40,455 + EX28DRAFT_3834 0.52 -1.4
40,718 + EX28DRAFT_3834 0.74 -0.8
40,720 + EX28DRAFT_3834 0.74 +0.5
40,747 + EX28DRAFT_3834 0.77 -0.2
40,747 + EX28DRAFT_3834 0.77 +0.3

Or see this region's nucleotide sequence