Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3830

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3829 and EX28DRAFT_3830 are separated by 72 nucleotidesEX28DRAFT_3830 and EX28DRAFT_3831 are separated by 308 nucleotides EX28DRAFT_3829: EX28DRAFT_3829 - D-xylulose kinase, at 32,822 to 34,276 _3829 EX28DRAFT_3830: EX28DRAFT_3830 - xylose isomerase, at 34,349 to 35,734 _3830 EX28DRAFT_3831: EX28DRAFT_3831 - D-xylose ABC transporter, substrate-binding protein, at 36,043 to 37,035 _3831 Position (kb) 34 35 36Strain fitness (log2 ratio) -2 -1 0 1 2 3at 33.682 kb on + strand, within EX28DRAFT_3829at 33.682 kb on + strand, within EX28DRAFT_3829at 33.682 kb on + strand, within EX28DRAFT_3829at 33.682 kb on + strand, within EX28DRAFT_3829at 33.683 kb on - strand, within EX28DRAFT_3829at 33.683 kb on - strand, within EX28DRAFT_3829at 33.895 kb on + strand, within EX28DRAFT_3829at 33.896 kb on - strand, within EX28DRAFT_3829at 34.272 kb on + strandat 34.272 kb on + strandat 34.272 kb on + strandat 34.272 kb on + strandat 34.273 kb on - strandat 34.273 kb on - strandat 34.273 kb on - strandat 34.273 kb on - strandat 34.273 kb on - strandat 34.273 kb on - strandat 34.277 kb on + strandat 34.278 kb on - strandat 34.355 kb on - strandat 34.366 kb on - strandat 34.366 kb on - strandat 34.366 kb on - strandat 34.366 kb on - strandat 34.373 kb on + strandat 34.440 kb on + strandat 34.441 kb on - strandat 34.624 kb on - strand, within EX28DRAFT_3830at 34.646 kb on + strand, within EX28DRAFT_3830at 34.646 kb on + strand, within EX28DRAFT_3830at 34.647 kb on - strand, within EX28DRAFT_3830at 34.705 kb on - strand, within EX28DRAFT_3830at 34.920 kb on + strand, within EX28DRAFT_3830at 34.921 kb on - strand, within EX28DRAFT_3830at 34.939 kb on - strand, within EX28DRAFT_3830at 34.945 kb on - strand, within EX28DRAFT_3830at 35.015 kb on - strand, within EX28DRAFT_3830at 35.015 kb on - strand, within EX28DRAFT_3830at 35.118 kb on + strand, within EX28DRAFT_3830at 35.118 kb on + strand, within EX28DRAFT_3830at 35.118 kb on + strand, within EX28DRAFT_3830at 35.118 kb on + strand, within EX28DRAFT_3830at 35.118 kb on + strand, within EX28DRAFT_3830at 35.119 kb on - strand, within EX28DRAFT_3830at 35.119 kb on - strand, within EX28DRAFT_3830at 35.119 kb on - strand, within EX28DRAFT_3830at 35.182 kb on + strand, within EX28DRAFT_3830at 35.183 kb on - strand, within EX28DRAFT_3830at 35.183 kb on - strand, within EX28DRAFT_3830at 35.297 kb on + strand, within EX28DRAFT_3830at 35.329 kb on - strand, within EX28DRAFT_3830at 35.329 kb on - strand, within EX28DRAFT_3830at 35.329 kb on - strand, within EX28DRAFT_3830at 35.379 kb on + strand, within EX28DRAFT_3830at 35.379 kb on + strand, within EX28DRAFT_3830at 35.379 kb on + strand, within EX28DRAFT_3830at 35.380 kb on - strand, within EX28DRAFT_3830at 35.394 kb on - strand, within EX28DRAFT_3830at 35.522 kb on - strand, within EX28DRAFT_3830at 35.522 kb on - strand, within EX28DRAFT_3830at 35.522 kb on - strand, within EX28DRAFT_3830at 35.522 kb on - strand, within EX28DRAFT_3830at 35.607 kb on - strandat 35.607 kb on - strandat 35.662 kb on - strandat 35.719 kb on - strandat 35.729 kb on - strandat 35.750 kb on + strandat 35.806 kb on + strandat 35.858 kb on - strandat 35.931 kb on - strandat 36.002 kb on + strandat 36.017 kb on + strandat 36.017 kb on + strandat 36.066 kb on - strandat 36.310 kb on + strand, within EX28DRAFT_3831at 36.311 kb on - strand, within EX28DRAFT_3831at 36.324 kb on - strand, within EX28DRAFT_3831at 36.326 kb on + strand, within EX28DRAFT_3831at 36.327 kb on - strand, within EX28DRAFT_3831at 36.327 kb on - strand, within EX28DRAFT_3831at 36.409 kb on + strand, within EX28DRAFT_3831at 36.446 kb on + strand, within EX28DRAFT_3831at 36.487 kb on + strand, within EX28DRAFT_3831at 36.487 kb on + strand, within EX28DRAFT_3831at 36.512 kb on + strand, within EX28DRAFT_3831at 36.516 kb on + strand, within EX28DRAFT_3831at 36.516 kb on + strand, within EX28DRAFT_3831at 36.586 kb on - strand, within EX28DRAFT_3831

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
remove
33,682 + EX28DRAFT_3829 0.59 +0.6
33,682 + EX28DRAFT_3829 0.59 +0.2
33,682 + EX28DRAFT_3829 0.59 -0.5
33,682 + EX28DRAFT_3829 0.59 +0.5
33,683 - EX28DRAFT_3829 0.59 -0.0
33,683 - EX28DRAFT_3829 0.59 -0.1
33,895 + EX28DRAFT_3829 0.74 +0.3
33,896 - EX28DRAFT_3829 0.74 +0.1
34,272 + -0.1
34,272 + -0.8
34,272 + +0.7
34,272 + +0.0
34,273 - +0.6
34,273 - +0.1
34,273 - +2.0
34,273 - -0.8
34,273 - -0.2
34,273 - -0.9
34,277 + -0.4
34,278 - +1.4
34,355 - +0.1
34,366 - +1.1
34,366 - -0.1
34,366 - -1.9
34,366 - -0.0
34,373 + +0.5
34,440 + +0.9
34,441 - +0.1
34,624 - EX28DRAFT_3830 0.20 +0.3
34,646 + EX28DRAFT_3830 0.21 -0.7
34,646 + EX28DRAFT_3830 0.21 +0.1
34,647 - EX28DRAFT_3830 0.22 -0.3
34,705 - EX28DRAFT_3830 0.26 +2.1
34,920 + EX28DRAFT_3830 0.41 -2.3
34,921 - EX28DRAFT_3830 0.41 +0.0
34,939 - EX28DRAFT_3830 0.43 -0.5
34,945 - EX28DRAFT_3830 0.43 -1.8
35,015 - EX28DRAFT_3830 0.48 -1.1
35,015 - EX28DRAFT_3830 0.48 -0.7
35,118 + EX28DRAFT_3830 0.55 -1.0
35,118 + EX28DRAFT_3830 0.55 +1.1
35,118 + EX28DRAFT_3830 0.55 -0.6
35,118 + EX28DRAFT_3830 0.55 -0.1
35,118 + EX28DRAFT_3830 0.55 -2.2
35,119 - EX28DRAFT_3830 0.56 -0.5
35,119 - EX28DRAFT_3830 0.56 -1.0
35,119 - EX28DRAFT_3830 0.56 +0.2
35,182 + EX28DRAFT_3830 0.60 -0.5
35,183 - EX28DRAFT_3830 0.60 -0.7
35,183 - EX28DRAFT_3830 0.60 +0.2
35,297 + EX28DRAFT_3830 0.68 -1.1
35,329 - EX28DRAFT_3830 0.71 -0.1
35,329 - EX28DRAFT_3830 0.71 -0.2
35,329 - EX28DRAFT_3830 0.71 +0.7
35,379 + EX28DRAFT_3830 0.74 +1.0
35,379 + EX28DRAFT_3830 0.74 -0.3
35,379 + EX28DRAFT_3830 0.74 +0.7
35,380 - EX28DRAFT_3830 0.74 -2.0
35,394 - EX28DRAFT_3830 0.75 +0.6
35,522 - EX28DRAFT_3830 0.85 -0.3
35,522 - EX28DRAFT_3830 0.85 -0.4
35,522 - EX28DRAFT_3830 0.85 -0.7
35,522 - EX28DRAFT_3830 0.85 +0.3
35,607 - +0.0
35,607 - -0.6
35,662 - -0.1
35,719 - -0.9
35,729 - +3.0
35,750 + +0.3
35,806 + -1.7
35,858 - -1.6
35,931 - -0.4
36,002 + +2.6
36,017 + -0.2
36,017 + +2.2
36,066 - -0.6
36,310 + EX28DRAFT_3831 0.27 -0.2
36,311 - EX28DRAFT_3831 0.27 +0.5
36,324 - EX28DRAFT_3831 0.28 -0.7
36,326 + EX28DRAFT_3831 0.28 -1.0
36,327 - EX28DRAFT_3831 0.29 -2.4
36,327 - EX28DRAFT_3831 0.29 +0.2
36,409 + EX28DRAFT_3831 0.37 -0.5
36,446 + EX28DRAFT_3831 0.41 +0.3
36,487 + EX28DRAFT_3831 0.45 -1.5
36,487 + EX28DRAFT_3831 0.45 -1.8
36,512 + EX28DRAFT_3831 0.47 +0.2
36,516 + EX28DRAFT_3831 0.48 -1.9
36,516 + EX28DRAFT_3831 0.48 +0.6
36,586 - EX28DRAFT_3831 0.55 +0.8

Or see this region's nucleotide sequence