Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3808 and EX28DRAFT_3809 are separated by 154 nucleotides EX28DRAFT_3809 and EX28DRAFT_3810 overlap by 23 nucleotides EX28DRAFT_3810 and EX28DRAFT_3811 overlap by 38 nucleotides
EX28DRAFT_3808: EX28DRAFT_3808 - Autotransporter protein or domain, integral membrane beta-barrel involved in protein secretion, at 12,544 to 13,242
_3808
EX28DRAFT_3809: EX28DRAFT_3809 - DNA-3-methyladenine glycosylase I (EC 3.2.2.20), at 13,397 to 13,978
_3809
EX28DRAFT_3810: EX28DRAFT_3810 - Acetyltransferase (GNAT) domain, at 13,956 to 14,402
_3810
EX28DRAFT_3811: EX28DRAFT_3811 - molybdopterin guanine dinucleotide-containing S/N-oxide reductases, at 14,365 to 16,692
_3811
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 13.006 kb on + strand, within EX28DRAFT_3808 at 13.006 kb on + strand, within EX28DRAFT_3808 at 13.007 kb on - strand, within EX28DRAFT_3808 at 13.007 kb on - strand, within EX28DRAFT_3808 at 13.007 kb on - strand, within EX28DRAFT_3808 at 13.008 kb on + strand, within EX28DRAFT_3808 at 13.009 kb on - strand, within EX28DRAFT_3808 at 13.009 kb on - strand, within EX28DRAFT_3808 at 13.009 kb on - strand, within EX28DRAFT_3808 at 13.048 kb on - strand, within EX28DRAFT_3808 at 13.063 kb on - strand, within EX28DRAFT_3808 at 13.063 kb on - strand, within EX28DRAFT_3808 at 13.098 kb on + strand, within EX28DRAFT_3808 at 13.098 kb on + strand, within EX28DRAFT_3808 at 13.099 kb on - strand, within EX28DRAFT_3808 at 13.099 kb on - strand, within EX28DRAFT_3808 at 13.099 kb on - strand, within EX28DRAFT_3808 at 13.099 kb on - strand, within EX28DRAFT_3808 at 13.116 kb on + strand, within EX28DRAFT_3808 at 13.137 kb on + strand, within EX28DRAFT_3808 at 13.138 kb on - strand, within EX28DRAFT_3808 at 13.139 kb on + strand, within EX28DRAFT_3808 at 13.139 kb on + strand, within EX28DRAFT_3808 at 13.139 kb on + strand, within EX28DRAFT_3808 at 13.139 kb on + strand, within EX28DRAFT_3808 at 13.140 kb on - strand, within EX28DRAFT_3808 at 13.165 kb on - strand, within EX28DRAFT_3808 at 13.165 kb on - strand, within EX28DRAFT_3808 at 13.235 kb on - strand at 13.276 kb on + strand at 13.304 kb on - strand at 13.312 kb on + strand at 13.312 kb on + strand at 13.316 kb on - strand at 13.316 kb on - strand at 13.319 kb on + strand at 13.319 kb on + strand at 13.319 kb on + strand at 13.320 kb on - strand at 13.320 kb on - strand at 13.320 kb on - strand at 13.331 kb on - strand at 13.331 kb on - strand at 13.334 kb on - strand at 13.334 kb on - strand at 13.382 kb on + strand at 13.433 kb on + strand at 13.433 kb on + strand at 13.434 kb on - strand at 13.434 kb on - strand at 13.435 kb on + strand at 13.537 kb on + strand, within EX28DRAFT_3809 at 13.538 kb on - strand, within EX28DRAFT_3809 at 13.892 kb on - strand, within EX28DRAFT_3809 at 14.142 kb on - strand, within EX28DRAFT_3810 at 14.255 kb on - strand, within EX28DRAFT_3810 at 14.255 kb on - strand, within EX28DRAFT_3810 at 14.268 kb on + strand, within EX28DRAFT_3810 at 14.298 kb on + strand, within EX28DRAFT_3810 at 14.417 kb on + strand at 14.418 kb on - strand at 14.418 kb on - strand at 14.685 kb on + strand, within EX28DRAFT_3811 at 14.740 kb on - strand, within EX28DRAFT_3811 at 14.741 kb on + strand, within EX28DRAFT_3811 at 14.741 kb on + strand, within EX28DRAFT_3811 at 14.741 kb on + strand, within EX28DRAFT_3811 at 14.741 kb on + strand, within EX28DRAFT_3811 at 14.742 kb on - strand, within EX28DRAFT_3811 at 14.742 kb on - strand, within EX28DRAFT_3811 at 14.742 kb on - strand, within EX28DRAFT_3811 at 14.742 kb on - strand, within EX28DRAFT_3811 at 14.746 kb on - strand, within EX28DRAFT_3811 at 14.841 kb on + strand, within EX28DRAFT_3811 at 14.841 kb on + strand, within EX28DRAFT_3811 at 14.841 kb on + strand, within EX28DRAFT_3811 at 14.842 kb on - strand, within EX28DRAFT_3811 at 14.842 kb on - strand, within EX28DRAFT_3811 at 14.842 kb on - strand, within EX28DRAFT_3811 at 14.842 kb on - strand, within EX28DRAFT_3811 at 14.864 kb on + strand, within EX28DRAFT_3811 at 14.891 kb on + strand, within EX28DRAFT_3811 at 14.892 kb on - strand, within EX28DRAFT_3811 at 15.080 kb on + strand, within EX28DRAFT_3811 at 15.228 kb on + strand, within EX28DRAFT_3811 at 15.228 kb on + strand, within EX28DRAFT_3811 at 15.228 kb on + strand, within EX28DRAFT_3811 at 15.228 kb on + strand, within EX28DRAFT_3811 at 15.229 kb on - strand, within EX28DRAFT_3811 at 15.301 kb on - strand, within EX28DRAFT_3811
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 13,006 + EX28DRAFT_3808 0.66 +0.1 13,006 + EX28DRAFT_3808 0.66 +0.4 13,007 - EX28DRAFT_3808 0.66 +0.4 13,007 - EX28DRAFT_3808 0.66 +0.6 13,007 - EX28DRAFT_3808 0.66 -0.5 13,008 + EX28DRAFT_3808 0.66 +0.2 13,009 - EX28DRAFT_3808 0.67 +0.6 13,009 - EX28DRAFT_3808 0.67 -0.6 13,009 - EX28DRAFT_3808 0.67 -2.5 13,048 - EX28DRAFT_3808 0.72 -0.2 13,063 - EX28DRAFT_3808 0.74 -0.2 13,063 - EX28DRAFT_3808 0.74 -0.4 13,098 + EX28DRAFT_3808 0.79 +0.6 13,098 + EX28DRAFT_3808 0.79 -0.8 13,099 - EX28DRAFT_3808 0.79 +1.0 13,099 - EX28DRAFT_3808 0.79 -0.9 13,099 - EX28DRAFT_3808 0.79 -0.1 13,099 - EX28DRAFT_3808 0.79 -2.6 13,116 + EX28DRAFT_3808 0.82 -0.0 13,137 + EX28DRAFT_3808 0.85 +0.6 13,138 - EX28DRAFT_3808 0.85 +0.6 13,139 + EX28DRAFT_3808 0.85 +0.3 13,139 + EX28DRAFT_3808 0.85 +0.7 13,139 + EX28DRAFT_3808 0.85 -0.5 13,139 + EX28DRAFT_3808 0.85 +0.2 13,140 - EX28DRAFT_3808 0.85 +0.5 13,165 - EX28DRAFT_3808 0.89 -1.6 13,165 - EX28DRAFT_3808 0.89 -1.1 13,235 - -1.1 13,276 + -0.7 13,304 - +0.5 13,312 + +0.2 13,312 + +0.1 13,316 - -0.2 13,316 - +1.7 13,319 + +0.3 13,319 + +0.6 13,319 + -0.4 13,320 - +1.5 13,320 - -0.7 13,320 - -0.4 13,331 - -1.6 13,331 - -0.2 13,334 - -0.0 13,334 - +0.3 13,382 + +0.1 13,433 + -0.7 13,433 + +0.0 13,434 - -1.8 13,434 - -0.7 13,435 + -0.6 13,537 + EX28DRAFT_3809 0.24 +0.3 13,538 - EX28DRAFT_3809 0.24 -0.2 13,892 - EX28DRAFT_3809 0.85 +0.7 14,142 - EX28DRAFT_3810 0.42 +0.3 14,255 - EX28DRAFT_3810 0.67 +1.0 14,255 - EX28DRAFT_3810 0.67 +0.1 14,268 + EX28DRAFT_3810 0.70 +0.5 14,298 + EX28DRAFT_3810 0.77 +0.7 14,417 + -0.3 14,418 - +1.4 14,418 - -0.6 14,685 + EX28DRAFT_3811 0.14 -0.6 14,740 - EX28DRAFT_3811 0.16 -1.1 14,741 + EX28DRAFT_3811 0.16 +1.0 14,741 + EX28DRAFT_3811 0.16 -0.2 14,741 + EX28DRAFT_3811 0.16 +1.0 14,741 + EX28DRAFT_3811 0.16 +0.4 14,742 - EX28DRAFT_3811 0.16 -1.1 14,742 - EX28DRAFT_3811 0.16 -0.4 14,742 - EX28DRAFT_3811 0.16 -0.6 14,742 - EX28DRAFT_3811 0.16 -1.0 14,746 - EX28DRAFT_3811 0.16 -1.7 14,841 + EX28DRAFT_3811 0.20 +0.9 14,841 + EX28DRAFT_3811 0.20 +0.2 14,841 + EX28DRAFT_3811 0.20 +0.3 14,842 - EX28DRAFT_3811 0.20 -0.5 14,842 - EX28DRAFT_3811 0.20 -2.4 14,842 - EX28DRAFT_3811 0.20 +0.0 14,842 - EX28DRAFT_3811 0.20 +0.5 14,864 + EX28DRAFT_3811 0.21 +1.9 14,891 + EX28DRAFT_3811 0.23 -2.1 14,892 - EX28DRAFT_3811 0.23 -0.4 15,080 + EX28DRAFT_3811 0.31 -1.3 15,228 + EX28DRAFT_3811 0.37 +1.6 15,228 + EX28DRAFT_3811 0.37 +0.8 15,228 + EX28DRAFT_3811 0.37 -0.9 15,228 + EX28DRAFT_3811 0.37 -0.2 15,229 - EX28DRAFT_3811 0.37 +0.3 15,301 - EX28DRAFT_3811 0.40 +0.4
Or see this region's nucleotide sequence