Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3776

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3774 and EX28DRAFT_3775 are separated by 65 nucleotidesEX28DRAFT_3775 and EX28DRAFT_3776 are separated by 58 nucleotidesEX28DRAFT_3776 and EX28DRAFT_3777 are separated by 28 nucleotidesEX28DRAFT_3777 and EX28DRAFT_3778 overlap by 14 nucleotidesEX28DRAFT_3778 and EX28DRAFT_3779 are separated by 196 nucleotides EX28DRAFT_3774: EX28DRAFT_3774 - Arginine/lysine/ornithine decarboxylases, at 457,148 to 459,280 _3774 EX28DRAFT_3775: EX28DRAFT_3775 - Lactoylglutathione lyase and related lyases, at 459,346 to 459,735 _3775 EX28DRAFT_3776: EX28DRAFT_3776 - tRNA(Ile)-lysidine synthetase, N-terminal domain/tRNA(Ile)-lysidine synthetase, C-terminal domain, at 459,794 to 461,083 _3776 EX28DRAFT_3777: EX28DRAFT_3777 - transcriptional antiterminator, Rof, at 461,112 to 461,372 _3777 EX28DRAFT_3778: EX28DRAFT_3778 - Uncharacterised protein family (UPF0253), at 461,359 to 461,559 _3778 EX28DRAFT_3779: EX28DRAFT_3779 - Uncharacterized protein conserved in bacteria, at 461,756 to 462,301 _3779 Position (kb) 459 460 461 462Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 458.852 kb on - strand, within EX28DRAFT_3774at 458.888 kb on + strand, within EX28DRAFT_3774at 458.986 kb on - strand, within EX28DRAFT_3774at 459.332 kb on - strandat 459.332 kb on - strandat 459.345 kb on + strandat 459.345 kb on + strandat 459.345 kb on + strandat 459.346 kb on - strandat 459.346 kb on - strandat 459.346 kb on - strandat 459.346 kb on - strandat 459.346 kb on - strandat 459.357 kb on - strandat 459.372 kb on + strandat 459.435 kb on + strand, within EX28DRAFT_3775at 459.435 kb on + strand, within EX28DRAFT_3775at 459.436 kb on - strand, within EX28DRAFT_3775at 459.505 kb on + strand, within EX28DRAFT_3775at 459.506 kb on - strand, within EX28DRAFT_3775at 459.506 kb on - strand, within EX28DRAFT_3775at 459.506 kb on - strand, within EX28DRAFT_3775at 459.733 kb on + strandat 459.734 kb on - strandat 459.779 kb on + strandat 459.785 kb on + strandat 459.793 kb on + strandat 459.801 kb on + strandat 459.802 kb on - strandat 459.802 kb on - strandat 461.164 kb on - strand, within EX28DRAFT_3777at 461.295 kb on + strand, within EX28DRAFT_3777at 461.295 kb on + strand, within EX28DRAFT_3777at 461.296 kb on - strand, within EX28DRAFT_3777at 461.330 kb on - strand, within EX28DRAFT_3777at 461.353 kb on + strandat 461.354 kb on - strandat 461.354 kb on - strandat 461.357 kb on + strandat 461.357 kb on + strandat 461.357 kb on + strandat 461.357 kb on + strandat 461.358 kb on - strandat 461.402 kb on + strand, within EX28DRAFT_3778at 461.457 kb on + strand, within EX28DRAFT_3778at 461.495 kb on + strand, within EX28DRAFT_3778at 461.540 kb on - strandat 461.540 kb on - strandat 461.554 kb on - strandat 461.554 kb on - strandat 461.586 kb on - strandat 461.602 kb on - strandat 461.607 kb on + strandat 461.608 kb on - strandat 461.616 kb on - strandat 461.639 kb on + strandat 461.639 kb on - strandat 461.639 kb on - strandat 461.639 kb on - strandat 461.640 kb on + strandat 461.640 kb on + strandat 461.640 kb on + strandat 461.641 kb on - strandat 461.641 kb on - strandat 461.682 kb on + strandat 461.682 kb on + strandat 461.687 kb on - strandat 461.899 kb on + strand, within EX28DRAFT_3779at 461.899 kb on + strand, within EX28DRAFT_3779at 461.903 kb on + strand, within EX28DRAFT_3779at 461.903 kb on + strand, within EX28DRAFT_3779at 461.903 kb on + strand, within EX28DRAFT_3779at 461.904 kb on - strand, within EX28DRAFT_3779at 461.995 kb on - strand, within EX28DRAFT_3779at 462.032 kb on - strand, within EX28DRAFT_3779at 462.032 kb on - strand, within EX28DRAFT_3779at 462.075 kb on - strand, within EX28DRAFT_3779

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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458,852 - EX28DRAFT_3774 0.80 +0.2
458,888 + EX28DRAFT_3774 0.82 +0.1
458,986 - EX28DRAFT_3774 0.86 +0.0
459,332 - +1.1
459,332 - -2.2
459,345 + -1.1
459,345 + +1.0
459,345 + -0.4
459,346 - +1.1
459,346 - -0.1
459,346 - -0.6
459,346 - +0.1
459,346 - -0.4
459,357 - -0.0
459,372 + -0.1
459,435 + EX28DRAFT_3775 0.23 -1.4
459,435 + EX28DRAFT_3775 0.23 -0.2
459,436 - EX28DRAFT_3775 0.23 -2.9
459,505 + EX28DRAFT_3775 0.41 -0.9
459,506 - EX28DRAFT_3775 0.41 +0.6
459,506 - EX28DRAFT_3775 0.41 -1.4
459,506 - EX28DRAFT_3775 0.41 +0.3
459,733 + -0.1
459,734 - -0.0
459,779 + -0.6
459,785 + +0.2
459,793 + +1.9
459,801 + +1.5
459,802 - +0.5
459,802 - +1.7
461,164 - EX28DRAFT_3777 0.20 +0.1
461,295 + EX28DRAFT_3777 0.70 -0.7
461,295 + EX28DRAFT_3777 0.70 -1.7
461,296 - EX28DRAFT_3777 0.70 +0.2
461,330 - EX28DRAFT_3777 0.84 -2.3
461,353 + +1.5
461,354 - -0.0
461,354 - -0.8
461,357 + +0.1
461,357 + -3.1
461,357 + -0.5
461,357 + -0.2
461,358 - +0.5
461,402 + EX28DRAFT_3778 0.21 +0.5
461,457 + EX28DRAFT_3778 0.49 -1.4
461,495 + EX28DRAFT_3778 0.68 +0.4
461,540 - +0.4
461,540 - -0.4
461,554 - +0.3
461,554 - +1.1
461,586 - +1.4
461,602 - +0.3
461,607 + -2.5
461,608 - +0.6
461,616 - -0.3
461,639 + -1.4
461,639 - -0.9
461,639 - +0.0
461,639 - -0.5
461,640 + +0.0
461,640 + +0.0
461,640 + -0.4
461,641 - +0.4
461,641 - -0.2
461,682 + +1.0
461,682 + +0.0
461,687 - +3.0
461,899 + EX28DRAFT_3779 0.26 -3.8
461,899 + EX28DRAFT_3779 0.26 +1.6
461,903 + EX28DRAFT_3779 0.27 -1.5
461,903 + EX28DRAFT_3779 0.27 -0.9
461,903 + EX28DRAFT_3779 0.27 -0.6
461,904 - EX28DRAFT_3779 0.27 -1.2
461,995 - EX28DRAFT_3779 0.44 -0.0
462,032 - EX28DRAFT_3779 0.51 +1.3
462,032 - EX28DRAFT_3779 0.51 +0.7
462,075 - EX28DRAFT_3779 0.58 +0.1

Or see this region's nucleotide sequence