Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3769

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3767 and EX28DRAFT_3768 are separated by 102 nucleotidesEX28DRAFT_3768 and EX28DRAFT_3769 are separated by 3 nucleotidesEX28DRAFT_3769 and EX28DRAFT_3770 overlap by 1 nucleotides EX28DRAFT_3767: EX28DRAFT_3767 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.191), at 448,438 to 449,463 _3767 EX28DRAFT_3768: EX28DRAFT_3768 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.-), at 449,566 to 450,021 _3768 EX28DRAFT_3769: EX28DRAFT_3769 - acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129), at 450,025 to 450,813 _3769 EX28DRAFT_3770: EX28DRAFT_3770 - lipid-A-disaccharide synthase (EC 2.4.1.182), at 450,813 to 451,961 _3770 Position (kb) 450 451Strain fitness (log2 ratio) -1 0 1at 449.482 kb on + strandat 449.482 kb on + strandat 449.507 kb on + strandat 449.507 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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449,482 + +0.5
449,482 + -0.4
449,507 + -1.2
449,507 + -1.4

Or see this region's nucleotide sequence