Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3763

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3761 and EX28DRAFT_3762 are separated by 186 nucleotidesEX28DRAFT_3762 and EX28DRAFT_3763 are separated by 12 nucleotidesEX28DRAFT_3763 and EX28DRAFT_3764 are separated by 11 nucleotides EX28DRAFT_3761: EX28DRAFT_3761 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267), at 440,992 to 442,191 _3761 EX28DRAFT_3762: EX28DRAFT_3762 - undecaprenyl diphosphate synthase, at 442,378 to 443,136 _3762 EX28DRAFT_3763: EX28DRAFT_3763 - CDP-diglyceride synthetase, at 443,149 to 444,006 _3763 EX28DRAFT_3764: EX28DRAFT_3764 - RIP metalloprotease RseP, at 444,018 to 445,370 _3764 Position (kb) 443 444 445Strain fitness (log2 ratio) -2 -1 0 1 2at 442.204 kb on + strandat 442.242 kb on + strandat 442.277 kb on + strandat 442.316 kb on + strandat 442.320 kb on + strandat 442.322 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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442,204 + +1.1
442,242 + +2.1
442,277 + +0.5
442,316 + -2.7
442,320 + -0.3
442,322 + -0.7

Or see this region's nucleotide sequence