Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3749 and EX28DRAFT_3750 are separated by 131 nucleotides EX28DRAFT_3750 and EX28DRAFT_3751 are separated by 146 nucleotides
EX28DRAFT_3749: EX28DRAFT_3749 - deoxyguanosinetriphosphate triphosphohydrolase, putative, at 427,912 to 429,426
_3749
EX28DRAFT_3750: EX28DRAFT_3750 - periplasmic serine protease, Do/DeqQ family, at 429,558 to 430,994
_3750
EX28DRAFT_3751: EX28DRAFT_3751 - Sugar diacid utilization regulator, at 431,141 to 432,298
_3751
Position (kb) 429
430
431 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 428.594 kb on - strand, within EX28DRAFT_3749 at 428.594 kb on - strand, within EX28DRAFT_3749 at 428.617 kb on + strand, within EX28DRAFT_3749 at 428.618 kb on - strand, within EX28DRAFT_3749 at 428.637 kb on + strand, within EX28DRAFT_3749 at 428.701 kb on - strand, within EX28DRAFT_3749 at 428.718 kb on + strand, within EX28DRAFT_3749 at 428.719 kb on - strand, within EX28DRAFT_3749 at 428.883 kb on - strand, within EX28DRAFT_3749 at 428.893 kb on - strand, within EX28DRAFT_3749 at 428.893 kb on - strand, within EX28DRAFT_3749 at 428.910 kb on + strand, within EX28DRAFT_3749 at 428.911 kb on - strand, within EX28DRAFT_3749 at 428.911 kb on - strand, within EX28DRAFT_3749 at 428.911 kb on - strand, within EX28DRAFT_3749 at 428.914 kb on + strand, within EX28DRAFT_3749 at 428.915 kb on - strand, within EX28DRAFT_3749 at 428.915 kb on - strand, within EX28DRAFT_3749 at 428.928 kb on + strand, within EX28DRAFT_3749 at 428.928 kb on + strand, within EX28DRAFT_3749 at 428.928 kb on + strand, within EX28DRAFT_3749 at 428.933 kb on + strand, within EX28DRAFT_3749 at 428.938 kb on - strand, within EX28DRAFT_3749 at 429.057 kb on + strand, within EX28DRAFT_3749 at 429.081 kb on - strand, within EX28DRAFT_3749 at 429.081 kb on - strand, within EX28DRAFT_3749 at 429.222 kb on - strand, within EX28DRAFT_3749 at 429.274 kb on + strand, within EX28DRAFT_3749 at 429.275 kb on - strand at 429.275 kb on - strand at 429.331 kb on + strand at 429.331 kb on + strand at 429.331 kb on + strand at 429.332 kb on - strand at 429.334 kb on + strand at 429.335 kb on - strand at 429.335 kb on - strand at 429.351 kb on + strand at 429.361 kb on + strand at 429.361 kb on + strand at 429.362 kb on - strand at 429.364 kb on - strand at 429.385 kb on + strand at 429.424 kb on + strand at 429.491 kb on - strand at 429.722 kb on + strand, within EX28DRAFT_3750 at 429.722 kb on + strand, within EX28DRAFT_3750 at 429.722 kb on + strand, within EX28DRAFT_3750 at 429.723 kb on - strand, within EX28DRAFT_3750 at 429.752 kb on + strand, within EX28DRAFT_3750 at 429.753 kb on - strand, within EX28DRAFT_3750 at 429.923 kb on + strand, within EX28DRAFT_3750 at 429.924 kb on - strand, within EX28DRAFT_3750 at 429.924 kb on - strand, within EX28DRAFT_3750 at 429.942 kb on + strand, within EX28DRAFT_3750 at 429.942 kb on + strand, within EX28DRAFT_3750 at 429.943 kb on - strand, within EX28DRAFT_3750 at 430.134 kb on + strand, within EX28DRAFT_3750 at 430.380 kb on - strand, within EX28DRAFT_3750 at 430.653 kb on - strand, within EX28DRAFT_3750 at 430.682 kb on + strand, within EX28DRAFT_3750 at 431.110 kb on + strand at 431.138 kb on + strand at 431.138 kb on + strand at 431.139 kb on - strand at 431.180 kb on - strand at 431.181 kb on - strand at 431.209 kb on + strand at 431.209 kb on + strand at 431.216 kb on - strand at 431.223 kb on + strand at 431.468 kb on - strand, within EX28DRAFT_3751 at 431.558 kb on - strand, within EX28DRAFT_3751 at 431.575 kb on + strand, within EX28DRAFT_3751 at 431.575 kb on + strand, within EX28DRAFT_3751 at 431.576 kb on - strand, within EX28DRAFT_3751 at 431.897 kb on + strand, within EX28DRAFT_3751 at 431.897 kb on + strand, within EX28DRAFT_3751 at 431.897 kb on + strand, within EX28DRAFT_3751 at 431.897 kb on + strand, within EX28DRAFT_3751 at 431.898 kb on - strand, within EX28DRAFT_3751 at 431.898 kb on - strand, within EX28DRAFT_3751 at 431.898 kb on - strand, within EX28DRAFT_3751 at 431.990 kb on + strand, within EX28DRAFT_3751 at 431.991 kb on - strand, within EX28DRAFT_3751 at 431.991 kb on - strand, within EX28DRAFT_3751 at 431.991 kb on - strand, within EX28DRAFT_3751 at 431.991 kb on - strand, within EX28DRAFT_3751
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 428,594 - EX28DRAFT_3749 0.45 -1.9 428,594 - EX28DRAFT_3749 0.45 +1.1 428,617 + EX28DRAFT_3749 0.47 -0.3 428,618 - EX28DRAFT_3749 0.47 -0.9 428,637 + EX28DRAFT_3749 0.48 +0.7 428,701 - EX28DRAFT_3749 0.52 -1.1 428,718 + EX28DRAFT_3749 0.53 +0.4 428,719 - EX28DRAFT_3749 0.53 -0.4 428,883 - EX28DRAFT_3749 0.64 +0.3 428,893 - EX28DRAFT_3749 0.65 -0.8 428,893 - EX28DRAFT_3749 0.65 -0.2 428,910 + EX28DRAFT_3749 0.66 -0.2 428,911 - EX28DRAFT_3749 0.66 -1.8 428,911 - EX28DRAFT_3749 0.66 -0.4 428,911 - EX28DRAFT_3749 0.66 +0.4 428,914 + EX28DRAFT_3749 0.66 +0.5 428,915 - EX28DRAFT_3749 0.66 -1.0 428,915 - EX28DRAFT_3749 0.66 -0.3 428,928 + EX28DRAFT_3749 0.67 -2.4 428,928 + EX28DRAFT_3749 0.67 +3.2 428,928 + EX28DRAFT_3749 0.67 +0.2 428,933 + EX28DRAFT_3749 0.67 -1.6 428,938 - EX28DRAFT_3749 0.68 +0.1 429,057 + EX28DRAFT_3749 0.76 -2.2 429,081 - EX28DRAFT_3749 0.77 +0.6 429,081 - EX28DRAFT_3749 0.77 +0.1 429,222 - EX28DRAFT_3749 0.86 +0.0 429,274 + EX28DRAFT_3749 0.90 -0.3 429,275 - +1.8 429,275 - -1.1 429,331 + -0.9 429,331 + -0.7 429,331 + +1.8 429,332 - -0.3 429,334 + -0.0 429,335 - -1.8 429,335 - +0.5 429,351 + -0.1 429,361 + +0.0 429,361 + +0.8 429,362 - +0.1 429,364 - -1.7 429,385 + -0.7 429,424 + -0.1 429,491 - -0.1 429,722 + EX28DRAFT_3750 0.11 -0.2 429,722 + EX28DRAFT_3750 0.11 -2.7 429,722 + EX28DRAFT_3750 0.11 +1.0 429,723 - EX28DRAFT_3750 0.11 -2.8 429,752 + EX28DRAFT_3750 0.14 -0.7 429,753 - EX28DRAFT_3750 0.14 -0.2 429,923 + EX28DRAFT_3750 0.25 -0.2 429,924 - EX28DRAFT_3750 0.25 +0.5 429,924 - EX28DRAFT_3750 0.25 -0.0 429,942 + EX28DRAFT_3750 0.27 +1.1 429,942 + EX28DRAFT_3750 0.27 +2.4 429,943 - EX28DRAFT_3750 0.27 +0.4 430,134 + EX28DRAFT_3750 0.40 -0.4 430,380 - EX28DRAFT_3750 0.57 -2.0 430,653 - EX28DRAFT_3750 0.76 +0.7 430,682 + EX28DRAFT_3750 0.78 +1.0 431,110 + -0.0 431,138 + +0.1 431,138 + -0.1 431,139 - -0.3 431,180 - -1.6 431,181 - -1.1 431,209 + -0.5 431,209 + -1.1 431,216 - -1.2 431,223 + +0.2 431,468 - EX28DRAFT_3751 0.28 -0.6 431,558 - EX28DRAFT_3751 0.36 -0.0 431,575 + EX28DRAFT_3751 0.37 -0.5 431,575 + EX28DRAFT_3751 0.37 +0.7 431,576 - EX28DRAFT_3751 0.38 -0.2 431,897 + EX28DRAFT_3751 0.65 +0.9 431,897 + EX28DRAFT_3751 0.65 +0.8 431,897 + EX28DRAFT_3751 0.65 -0.5 431,897 + EX28DRAFT_3751 0.65 +2.2 431,898 - EX28DRAFT_3751 0.65 +1.8 431,898 - EX28DRAFT_3751 0.65 +1.3 431,898 - EX28DRAFT_3751 0.65 -1.4 431,990 + EX28DRAFT_3751 0.73 -0.9 431,991 - EX28DRAFT_3751 0.73 -0.7 431,991 - EX28DRAFT_3751 0.73 +0.9 431,991 - EX28DRAFT_3751 0.73 -0.2 431,991 - EX28DRAFT_3751 0.73 -0.3
Or see this region's nucleotide sequence