Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3721 and EX28DRAFT_3722 are separated by 208 nucleotides EX28DRAFT_3722 and EX28DRAFT_3723 are separated by 61 nucleotides EX28DRAFT_3723 and EX28DRAFT_3724 are separated by 107 nucleotides
EX28DRAFT_3721: EX28DRAFT_3721 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 396,394 to 398,784
_3721
EX28DRAFT_3722: EX28DRAFT_3722 - hypoxanthine phosphoribosyltransferase, at 398,993 to 399,529
_3722
EX28DRAFT_3723: EX28DRAFT_3723 - Carbonic anhydrase, at 399,591 to 400,253
_3723
EX28DRAFT_3724: EX28DRAFT_3724 - ABC-type multidrug transport system, ATPase component, at 400,361 to 401,287
_3724
Position (kb) 398
399
400 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 398.095 kb on - strand, within EX28DRAFT_3721 at 398.103 kb on - strand, within EX28DRAFT_3721 at 398.109 kb on + strand, within EX28DRAFT_3721 at 398.110 kb on - strand, within EX28DRAFT_3721 at 398.110 kb on - strand, within EX28DRAFT_3721 at 398.110 kb on - strand, within EX28DRAFT_3721 at 398.246 kb on + strand, within EX28DRAFT_3721 at 398.273 kb on + strand, within EX28DRAFT_3721 at 398.413 kb on + strand, within EX28DRAFT_3721 at 398.414 kb on - strand, within EX28DRAFT_3721 at 398.414 kb on - strand, within EX28DRAFT_3721 at 398.583 kb on - strand at 398.607 kb on + strand at 398.618 kb on - strand at 398.618 kb on - strand at 398.740 kb on + strand at 398.785 kb on - strand at 398.794 kb on - strand at 398.814 kb on - strand at 398.828 kb on + strand at 398.828 kb on + strand at 398.832 kb on + strand at 398.832 kb on + strand at 398.832 kb on + strand at 398.832 kb on + strand at 398.832 kb on + strand at 398.833 kb on - strand at 398.833 kb on - strand at 398.834 kb on + strand at 398.835 kb on - strand at 398.877 kb on - strand at 398.877 kb on - strand at 398.910 kb on + strand at 398.910 kb on + strand at 398.911 kb on - strand at 398.911 kb on - strand at 399.527 kb on + strand at 399.593 kb on - strand at 399.596 kb on + strand at 399.612 kb on - strand at 399.612 kb on - strand at 399.713 kb on - strand, within EX28DRAFT_3723 at 399.785 kb on + strand, within EX28DRAFT_3723 at 399.787 kb on + strand, within EX28DRAFT_3723 at 399.787 kb on + strand, within EX28DRAFT_3723 at 399.787 kb on + strand, within EX28DRAFT_3723 at 399.787 kb on + strand, within EX28DRAFT_3723 at 399.787 kb on + strand, within EX28DRAFT_3723 at 399.788 kb on - strand, within EX28DRAFT_3723 at 399.788 kb on - strand, within EX28DRAFT_3723 at 399.788 kb on - strand, within EX28DRAFT_3723 at 399.864 kb on - strand, within EX28DRAFT_3723 at 399.864 kb on - strand, within EX28DRAFT_3723 at 399.864 kb on - strand, within EX28DRAFT_3723 at 399.864 kb on - strand, within EX28DRAFT_3723 at 400.006 kb on + strand, within EX28DRAFT_3723 at 400.007 kb on - strand, within EX28DRAFT_3723 at 400.215 kb on + strand at 400.238 kb on + strand at 400.238 kb on + strand at 400.238 kb on + strand at 400.238 kb on + strand at 400.238 kb on + strand at 400.238 kb on + strand at 400.239 kb on - strand at 400.239 kb on - strand at 400.239 kb on - strand at 400.239 kb on - strand at 400.239 kb on - strand at 400.242 kb on + strand at 400.242 kb on + strand at 400.242 kb on + strand at 400.242 kb on + strand at 400.242 kb on + strand at 400.243 kb on - strand at 400.243 kb on - strand at 400.243 kb on - strand at 400.243 kb on - strand at 400.243 kb on - strand at 400.243 kb on - strand at 400.243 kb on - strand at 400.243 kb on - strand at 400.280 kb on - strand at 400.293 kb on - strand at 400.295 kb on + strand at 400.296 kb on - strand at 400.297 kb on + strand at 400.297 kb on + strand at 400.350 kb on - strand at 400.354 kb on + strand at 400.354 kb on + strand at 400.390 kb on + strand at 400.431 kb on + strand at 400.432 kb on - strand at 400.460 kb on + strand, within EX28DRAFT_3724
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 398,095 - EX28DRAFT_3721 0.71 +1.6 398,103 - EX28DRAFT_3721 0.71 -0.5 398,109 + EX28DRAFT_3721 0.72 -0.2 398,110 - EX28DRAFT_3721 0.72 -0.3 398,110 - EX28DRAFT_3721 0.72 -0.5 398,110 - EX28DRAFT_3721 0.72 +0.4 398,246 + EX28DRAFT_3721 0.77 -1.3 398,273 + EX28DRAFT_3721 0.79 +0.3 398,413 + EX28DRAFT_3721 0.84 -2.9 398,414 - EX28DRAFT_3721 0.84 -0.3 398,414 - EX28DRAFT_3721 0.84 -2.6 398,583 - +1.0 398,607 + -0.1 398,618 - -0.0 398,618 - +3.7 398,740 + +1.4 398,785 - +0.4 398,794 - +0.3 398,814 - -0.8 398,828 + -0.3 398,828 + -2.6 398,832 + +0.1 398,832 + +0.3 398,832 + +1.3 398,832 + -0.3 398,832 + -0.2 398,833 - -3.3 398,833 - +0.8 398,834 + -0.8 398,835 - -0.8 398,877 - +0.3 398,877 - -0.7 398,910 + -0.3 398,910 + -0.2 398,911 - -0.3 398,911 - -0.7 399,527 + -1.7 399,593 - -2.7 399,596 + -0.3 399,612 - +0.1 399,612 - +0.2 399,713 - EX28DRAFT_3723 0.18 -0.6 399,785 + EX28DRAFT_3723 0.29 -2.4 399,787 + EX28DRAFT_3723 0.30 -1.8 399,787 + EX28DRAFT_3723 0.30 -0.1 399,787 + EX28DRAFT_3723 0.30 -0.5 399,787 + EX28DRAFT_3723 0.30 -1.1 399,787 + EX28DRAFT_3723 0.30 +0.4 399,788 - EX28DRAFT_3723 0.30 -2.5 399,788 - EX28DRAFT_3723 0.30 +0.0 399,788 - EX28DRAFT_3723 0.30 -0.6 399,864 - EX28DRAFT_3723 0.41 +0.3 399,864 - EX28DRAFT_3723 0.41 -2.2 399,864 - EX28DRAFT_3723 0.41 +0.3 399,864 - EX28DRAFT_3723 0.41 -0.5 400,006 + EX28DRAFT_3723 0.63 +0.2 400,007 - EX28DRAFT_3723 0.63 -0.1 400,215 + +3.7 400,238 + +0.1 400,238 + +0.7 400,238 + +0.6 400,238 + +0.9 400,238 + +0.5 400,238 + -1.0 400,239 - -0.1 400,239 - -0.2 400,239 - -0.7 400,239 - +0.9 400,239 - -0.6 400,242 + +0.8 400,242 + -0.2 400,242 + +1.5 400,242 + -0.6 400,242 + -0.1 400,243 - +0.3 400,243 - -1.1 400,243 - +2.6 400,243 - +0.2 400,243 - +0.9 400,243 - -0.3 400,243 - +0.2 400,243 - -1.0 400,280 - +1.1 400,293 - +0.3 400,295 + -0.6 400,296 - +0.4 400,297 + +1.1 400,297 + -0.9 400,350 - -0.1 400,354 + +1.1 400,354 + +3.6 400,390 + +0.5 400,431 + -1.6 400,432 - +0.4 400,460 + EX28DRAFT_3724 0.11 -0.9
Or see this region's nucleotide sequence