Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3702 and EX28DRAFT_3703 are separated by 87 nucleotides EX28DRAFT_3703 and EX28DRAFT_3704 are separated by 9 nucleotides EX28DRAFT_3704 and EX28DRAFT_3705 are separated by 18 nucleotides EX28DRAFT_3705 and EX28DRAFT_3706 are separated by 10 nucleotides
EX28DRAFT_3702: EX28DRAFT_3702 - nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19), at 372,514 to 373,407
_3702
EX28DRAFT_3703: EX28DRAFT_3703 - N-acetylmuramoyl-L-alanine amidase, at 373,495 to 374,046
_3703
EX28DRAFT_3704: EX28DRAFT_3704 - Membrane protein required for beta-lactamase induction, at 374,056 to 374,910
_3704
EX28DRAFT_3705: EX28DRAFT_3705 - Predicted beta-xylosidase, at 374,929 to 375,879
_3705
EX28DRAFT_3706: EX28DRAFT_3706 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 375,890 to 377,287
_3706
Position (kb) 374
375 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 373.347 kb on + strand at 373.350 kb on + strand at 373.350 kb on + strand at 373.350 kb on + strand at 373.350 kb on + strand at 373.350 kb on + strand at 373.351 kb on - strand at 373.351 kb on - strand at 373.351 kb on - strand at 373.351 kb on - strand at 373.351 kb on - strand at 373.351 kb on - strand at 373.354 kb on - strand at 373.391 kb on + strand at 373.410 kb on + strand at 373.411 kb on - strand at 373.411 kb on - strand at 373.437 kb on - strand at 373.452 kb on + strand at 374.045 kb on - strand at 374.052 kb on + strand at 374.052 kb on + strand at 374.052 kb on + strand at 374.068 kb on - strand at 374.214 kb on + strand, within EX28DRAFT_3704 at 374.214 kb on + strand, within EX28DRAFT_3704 at 374.214 kb on + strand, within EX28DRAFT_3704 at 374.215 kb on - strand, within EX28DRAFT_3704 at 374.239 kb on + strand, within EX28DRAFT_3704 at 374.335 kb on + strand, within EX28DRAFT_3704 at 374.336 kb on - strand, within EX28DRAFT_3704 at 374.473 kb on - strand, within EX28DRAFT_3704 at 374.485 kb on + strand, within EX28DRAFT_3704 at 374.485 kb on + strand, within EX28DRAFT_3704 at 374.486 kb on - strand, within EX28DRAFT_3704 at 374.510 kb on + strand, within EX28DRAFT_3704 at 374.684 kb on + strand, within EX28DRAFT_3704 at 374.742 kb on + strand, within EX28DRAFT_3704 at 374.743 kb on - strand, within EX28DRAFT_3704 at 374.743 kb on - strand, within EX28DRAFT_3704 at 374.753 kb on - strand, within EX28DRAFT_3704 at 375.020 kb on + strand at 375.021 kb on - strand at 375.070 kb on + strand, within EX28DRAFT_3705 at 375.070 kb on + strand, within EX28DRAFT_3705 at 375.070 kb on + strand, within EX28DRAFT_3705 at 375.070 kb on + strand, within EX28DRAFT_3705 at 375.071 kb on - strand, within EX28DRAFT_3705 at 375.071 kb on - strand, within EX28DRAFT_3705 at 375.071 kb on - strand, within EX28DRAFT_3705 at 375.134 kb on + strand, within EX28DRAFT_3705 at 375.135 kb on - strand, within EX28DRAFT_3705 at 375.206 kb on - strand, within EX28DRAFT_3705 at 375.227 kb on + strand, within EX28DRAFT_3705 at 375.228 kb on - strand, within EX28DRAFT_3705 at 375.228 kb on - strand, within EX28DRAFT_3705 at 375.254 kb on + strand, within EX28DRAFT_3705 at 375.254 kb on + strand, within EX28DRAFT_3705 at 375.271 kb on - strand, within EX28DRAFT_3705 at 375.332 kb on + strand, within EX28DRAFT_3705 at 375.399 kb on - strand, within EX28DRAFT_3705 at 375.399 kb on - strand, within EX28DRAFT_3705 at 375.399 kb on - strand, within EX28DRAFT_3705 at 375.495 kb on + strand, within EX28DRAFT_3705 at 375.576 kb on + strand, within EX28DRAFT_3705 at 375.576 kb on + strand, within EX28DRAFT_3705 at 375.576 kb on + strand, within EX28DRAFT_3705 at 375.576 kb on + strand, within EX28DRAFT_3705 at 375.577 kb on - strand, within EX28DRAFT_3705 at 375.577 kb on - strand, within EX28DRAFT_3705 at 375.633 kb on - strand, within EX28DRAFT_3705 at 375.633 kb on - strand, within EX28DRAFT_3705 at 375.633 kb on - strand, within EX28DRAFT_3705 at 375.633 kb on - strand, within EX28DRAFT_3705 at 375.633 kb on - strand, within EX28DRAFT_3705 at 375.633 kb on - strand, within EX28DRAFT_3705 at 375.638 kb on + strand, within EX28DRAFT_3705 at 375.638 kb on + strand, within EX28DRAFT_3705 at 375.639 kb on - strand, within EX28DRAFT_3705 at 375.639 kb on - strand, within EX28DRAFT_3705 at 375.735 kb on + strand, within EX28DRAFT_3705 at 375.736 kb on - strand, within EX28DRAFT_3705 at 375.806 kb on + strand at 375.806 kb on + strand at 375.809 kb on + strand at 375.827 kb on - strand at 375.891 kb on + strand at 375.892 kb on - strand at 375.892 kb on - strand at 375.892 kb on - strand at 375.896 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 373,347 + +0.6 373,350 + -0.2 373,350 + +0.7 373,350 + +1.1 373,350 + -0.0 373,350 + -3.3 373,351 - +0.6 373,351 - -0.0 373,351 - +1.2 373,351 - -1.3 373,351 - -0.8 373,351 - -0.1 373,354 - +0.5 373,391 + -1.5 373,410 + +0.6 373,411 - -0.2 373,411 - -2.4 373,437 - -1.2 373,452 + +0.5 374,045 - +0.5 374,052 + -0.1 374,052 + +1.5 374,052 + +0.7 374,068 - -1.3 374,214 + EX28DRAFT_3704 0.18 +0.1 374,214 + EX28DRAFT_3704 0.18 +1.9 374,214 + EX28DRAFT_3704 0.18 +0.2 374,215 - EX28DRAFT_3704 0.19 +0.8 374,239 + EX28DRAFT_3704 0.21 -2.9 374,335 + EX28DRAFT_3704 0.33 +1.7 374,336 - EX28DRAFT_3704 0.33 -0.3 374,473 - EX28DRAFT_3704 0.49 -0.7 374,485 + EX28DRAFT_3704 0.50 +0.4 374,485 + EX28DRAFT_3704 0.50 +0.8 374,486 - EX28DRAFT_3704 0.50 +0.4 374,510 + EX28DRAFT_3704 0.53 -1.9 374,684 + EX28DRAFT_3704 0.73 -0.2 374,742 + EX28DRAFT_3704 0.80 -0.1 374,743 - EX28DRAFT_3704 0.80 +0.7 374,743 - EX28DRAFT_3704 0.80 -0.1 374,753 - EX28DRAFT_3704 0.82 +0.2 375,020 + +0.6 375,021 - +0.0 375,070 + EX28DRAFT_3705 0.15 -0.0 375,070 + EX28DRAFT_3705 0.15 +1.0 375,070 + EX28DRAFT_3705 0.15 +2.1 375,070 + EX28DRAFT_3705 0.15 -1.4 375,071 - EX28DRAFT_3705 0.15 -0.2 375,071 - EX28DRAFT_3705 0.15 -1.1 375,071 - EX28DRAFT_3705 0.15 -0.6 375,134 + EX28DRAFT_3705 0.22 -0.9 375,135 - EX28DRAFT_3705 0.22 -0.7 375,206 - EX28DRAFT_3705 0.29 -0.5 375,227 + EX28DRAFT_3705 0.31 +0.8 375,228 - EX28DRAFT_3705 0.31 +0.5 375,228 - EX28DRAFT_3705 0.31 -0.4 375,254 + EX28DRAFT_3705 0.34 +0.7 375,254 + EX28DRAFT_3705 0.34 +1.1 375,271 - EX28DRAFT_3705 0.36 -0.7 375,332 + EX28DRAFT_3705 0.42 +0.3 375,399 - EX28DRAFT_3705 0.49 -0.4 375,399 - EX28DRAFT_3705 0.49 -0.9 375,399 - EX28DRAFT_3705 0.49 +0.1 375,495 + EX28DRAFT_3705 0.60 -0.2 375,576 + EX28DRAFT_3705 0.68 +0.2 375,576 + EX28DRAFT_3705 0.68 +0.9 375,576 + EX28DRAFT_3705 0.68 +2.1 375,576 + EX28DRAFT_3705 0.68 +0.3 375,577 - EX28DRAFT_3705 0.68 +2.1 375,577 - EX28DRAFT_3705 0.68 +0.4 375,633 - EX28DRAFT_3705 0.74 -1.2 375,633 - EX28DRAFT_3705 0.74 -0.6 375,633 - EX28DRAFT_3705 0.74 -0.2 375,633 - EX28DRAFT_3705 0.74 -3.9 375,633 - EX28DRAFT_3705 0.74 -1.8 375,633 - EX28DRAFT_3705 0.74 +0.2 375,638 + EX28DRAFT_3705 0.75 -0.6 375,638 + EX28DRAFT_3705 0.75 -0.3 375,639 - EX28DRAFT_3705 0.75 +0.1 375,639 - EX28DRAFT_3705 0.75 -0.4 375,735 + EX28DRAFT_3705 0.85 +2.1 375,736 - EX28DRAFT_3705 0.85 -0.5 375,806 + -0.4 375,806 + +0.7 375,809 + +0.1 375,827 - +0.1 375,891 + -2.9 375,892 - -0.5 375,892 - +0.3 375,892 - -0.7 375,896 - -0.0
Or see this region's nucleotide sequence