Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3676 and EX28DRAFT_3677 are separated by 2 nucleotides EX28DRAFT_3677 and EX28DRAFT_3678 overlap by 4 nucleotides EX28DRAFT_3678 and EX28DRAFT_3679 are separated by 15 nucleotides
EX28DRAFT_3676: EX28DRAFT_3676 - mraZ protein, at 344,535 to 345,029
_3676
EX28DRAFT_3677: EX28DRAFT_3677 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase, at 345,032 to 345,973
_3677
EX28DRAFT_3678: EX28DRAFT_3678 - cell division protein FtsL, at 345,970 to 346,335
_3678
EX28DRAFT_3679: EX28DRAFT_3679 - Cell division protein FtsI/penicillin-binding protein 2, at 346,351 to 348,117
_3679
Position (kb) 345
346 Strain fitness (log2 ratio) -1
0
1
2
3 at 344.042 kb on + strand at 344.043 kb on - strand at 344.064 kb on + strand at 344.065 kb on - strand at 344.065 kb on - strand at 344.183 kb on - strand at 344.318 kb on - strand at 344.319 kb on + strand at 344.320 kb on - strand at 344.324 kb on - strand at 344.386 kb on + strand at 344.386 kb on + strand at 344.386 kb on + strand at 344.442 kb on - strand at 344.442 kb on - strand at 344.450 kb on - strand at 344.474 kb on + strand at 344.690 kb on + strand, within EX28DRAFT_3676 at 345.027 kb on + strand at 345.031 kb on + strand at 345.284 kb on + strand, within EX28DRAFT_3677 at 346.322 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 344,042 + -0.6 344,043 - -0.6 344,064 + +3.7 344,065 - -0.2 344,065 - -0.5 344,183 - -0.7 344,318 - +0.4 344,319 + +0.1 344,320 - +0.0 344,324 - +0.8 344,386 + +2.9 344,386 + +0.2 344,386 + +0.2 344,442 - +0.7 344,442 - +0.8 344,450 - +0.5 344,474 + +0.5 344,690 + EX28DRAFT_3676 0.31 +0.7 345,027 + -0.8 345,031 + +0.2 345,284 + EX28DRAFT_3677 0.27 +2.1 346,322 + +0.7
Or see this region's nucleotide sequence