Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3611 and EX28DRAFT_3612 are separated by 635 nucleotides EX28DRAFT_3612 and EX28DRAFT_3613 are separated by 218 nucleotides EX28DRAFT_3613 and EX28DRAFT_3614 are separated by 24 nucleotides
EX28DRAFT_3611: EX28DRAFT_3611 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 269,968 to 270,684
_3611
EX28DRAFT_3612: EX28DRAFT_3612 - RNA methyltransferase, TrmH family, group 1, at 271,320 to 272,006
_3612
EX28DRAFT_3613: EX28DRAFT_3613 - RNA, at 272,225 to 272,342
_3613
EX28DRAFT_3614: EX28DRAFT_3614 - aspartate kinase (EC 2.7.2.4), at 272,367 to 274,829
_3614
Position (kb) 271
272
273 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 270.786 kb on - strand at 270.795 kb on - strand at 270.927 kb on - strand at 270.954 kb on - strand at 270.969 kb on - strand at 270.969 kb on - strand at 270.971 kb on - strand at 270.971 kb on - strand at 271.058 kb on + strand at 271.058 kb on + strand at 271.077 kb on - strand at 271.078 kb on + strand at 271.103 kb on - strand at 271.137 kb on + strand at 271.143 kb on + strand at 271.146 kb on + strand at 271.188 kb on + strand at 271.365 kb on - strand at 271.412 kb on - strand, within EX28DRAFT_3612 at 271.412 kb on - strand, within EX28DRAFT_3612 at 271.581 kb on + strand, within EX28DRAFT_3612 at 271.581 kb on + strand, within EX28DRAFT_3612 at 271.751 kb on - strand, within EX28DRAFT_3612 at 271.751 kb on - strand, within EX28DRAFT_3612 at 271.770 kb on + strand, within EX28DRAFT_3612 at 271.770 kb on + strand, within EX28DRAFT_3612 at 271.771 kb on - strand, within EX28DRAFT_3612 at 271.783 kb on + strand, within EX28DRAFT_3612 at 271.793 kb on - strand, within EX28DRAFT_3612 at 271.793 kb on - strand, within EX28DRAFT_3612 at 271.795 kb on + strand, within EX28DRAFT_3612 at 271.796 kb on - strand, within EX28DRAFT_3612 at 271.874 kb on - strand, within EX28DRAFT_3612 at 271.874 kb on - strand, within EX28DRAFT_3612 at 272.146 kb on + strand at 272.192 kb on + strand at 272.193 kb on - strand at 272.206 kb on + strand at 272.244 kb on + strand, within EX28DRAFT_3613 at 272.245 kb on - strand, within EX28DRAFT_3613 at 272.247 kb on + strand, within EX28DRAFT_3613 at 272.247 kb on + strand, within EX28DRAFT_3613 at 272.247 kb on + strand, within EX28DRAFT_3613 at 272.248 kb on - strand, within EX28DRAFT_3613 at 272.271 kb on + strand, within EX28DRAFT_3613 at 272.320 kb on + strand, within EX28DRAFT_3613 at 272.321 kb on - strand, within EX28DRAFT_3613 at 272.321 kb on - strand, within EX28DRAFT_3613 at 272.360 kb on + strand at 272.391 kb on - strand at 272.574 kb on - strand at 272.757 kb on - strand, within EX28DRAFT_3614 at 272.845 kb on - strand, within EX28DRAFT_3614
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 270,786 - +1.4 270,795 - -0.7 270,927 - +0.7 270,954 - +1.1 270,969 - +1.1 270,969 - -0.2 270,971 - +0.5 270,971 - +0.5 271,058 + +0.2 271,058 + -0.5 271,077 - +0.5 271,078 + -0.8 271,103 - +0.2 271,137 + -0.5 271,143 + -0.6 271,146 + +0.6 271,188 + -2.8 271,365 - -1.0 271,412 - EX28DRAFT_3612 0.13 -2.4 271,412 - EX28DRAFT_3612 0.13 -0.5 271,581 + EX28DRAFT_3612 0.38 -0.8 271,581 + EX28DRAFT_3612 0.38 -1.5 271,751 - EX28DRAFT_3612 0.63 +0.5 271,751 - EX28DRAFT_3612 0.63 -0.3 271,770 + EX28DRAFT_3612 0.66 +1.2 271,770 + EX28DRAFT_3612 0.66 -0.2 271,771 - EX28DRAFT_3612 0.66 -0.2 271,783 + EX28DRAFT_3612 0.67 +0.2 271,793 - EX28DRAFT_3612 0.69 +0.4 271,793 - EX28DRAFT_3612 0.69 -0.8 271,795 + EX28DRAFT_3612 0.69 -0.3 271,796 - EX28DRAFT_3612 0.69 -0.9 271,874 - EX28DRAFT_3612 0.81 -0.8 271,874 - EX28DRAFT_3612 0.81 +0.2 272,146 + -3.9 272,192 + -0.7 272,193 - -0.6 272,206 + +0.2 272,244 + EX28DRAFT_3613 0.16 -1.0 272,245 - EX28DRAFT_3613 0.17 +0.1 272,247 + EX28DRAFT_3613 0.19 -0.5 272,247 + EX28DRAFT_3613 0.19 -0.3 272,247 + EX28DRAFT_3613 0.19 -1.7 272,248 - EX28DRAFT_3613 0.19 -0.6 272,271 + EX28DRAFT_3613 0.39 -0.1 272,320 + EX28DRAFT_3613 0.81 -2.0 272,321 - EX28DRAFT_3613 0.81 -1.1 272,321 - EX28DRAFT_3613 0.81 -1.6 272,360 + +0.3 272,391 - -1.8 272,574 - -1.6 272,757 - EX28DRAFT_3614 0.16 -1.6 272,845 - EX28DRAFT_3614 0.19 -1.1
Or see this region's nucleotide sequence