Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3608

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3606 and EX28DRAFT_3607 are separated by 211 nucleotidesEX28DRAFT_3607 and EX28DRAFT_3608 are separated by 14 nucleotidesEX28DRAFT_3608 and EX28DRAFT_3609 overlap by 1 nucleotides EX28DRAFT_3606: EX28DRAFT_3606 - AraC-type DNA-binding domain-containing proteins, at 264,833 to 265,702 _3606 EX28DRAFT_3607: EX28DRAFT_3607 - Uncharacterized protein conserved in bacteria, at 265,914 to 266,384 _3607 EX28DRAFT_3608: EX28DRAFT_3608 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 266,399 to 267,088 _3608 EX28DRAFT_3609: EX28DRAFT_3609 - Signal transduction histidine kinase, at 267,088 to 268,512 _3609 Position (kb) 266 267 268Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 265.527 kb on - strand, within EX28DRAFT_3606at 265.543 kb on + strand, within EX28DRAFT_3606at 265.544 kb on - strand, within EX28DRAFT_3606at 265.545 kb on + strand, within EX28DRAFT_3606at 265.546 kb on - strand, within EX28DRAFT_3606at 265.546 kb on - strand, within EX28DRAFT_3606at 265.546 kb on - strand, within EX28DRAFT_3606at 265.702 kb on + strandat 265.702 kb on + strandat 265.702 kb on + strandat 265.702 kb on + strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.703 kb on - strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.704 kb on + strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.705 kb on - strandat 265.719 kb on + strandat 265.719 kb on + strandat 265.719 kb on + strandat 265.756 kb on + strandat 265.831 kb on - strandat 265.832 kb on + strandat 265.837 kb on + strandat 265.866 kb on + strandat 266.079 kb on + strand, within EX28DRAFT_3607at 266.196 kb on - strand, within EX28DRAFT_3607at 266.224 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.277 kb on + strand, within EX28DRAFT_3607at 266.305 kb on - strand, within EX28DRAFT_3607at 266.330 kb on - strand, within EX28DRAFT_3607at 266.370 kb on - strandat 266.382 kb on + strandat 266.382 kb on + strandat 266.459 kb on + strandat 266.460 kb on - strandat 266.460 kb on - strandat 266.662 kb on - strand, within EX28DRAFT_3608at 266.699 kb on + strand, within EX28DRAFT_3608at 266.699 kb on + strand, within EX28DRAFT_3608at 266.700 kb on - strand, within EX28DRAFT_3608at 266.700 kb on - strand, within EX28DRAFT_3608at 266.946 kb on + strand, within EX28DRAFT_3608at 267.068 kb on + strandat 267.069 kb on - strandat 267.176 kb on + strandat 267.436 kb on + strand, within EX28DRAFT_3609at 267.532 kb on + strand, within EX28DRAFT_3609at 267.532 kb on + strand, within EX28DRAFT_3609at 267.532 kb on + strand, within EX28DRAFT_3609at 267.532 kb on + strand, within EX28DRAFT_3609at 267.532 kb on + strand, within EX28DRAFT_3609at 267.533 kb on - strand, within EX28DRAFT_3609at 267.533 kb on - strand, within EX28DRAFT_3609at 267.533 kb on - strand, within EX28DRAFT_3609at 267.533 kb on - strand, within EX28DRAFT_3609at 267.533 kb on - strand, within EX28DRAFT_3609at 267.595 kb on - strand, within EX28DRAFT_3609at 267.714 kb on + strand, within EX28DRAFT_3609at 267.714 kb on + strand, within EX28DRAFT_3609at 267.720 kb on + strand, within EX28DRAFT_3609at 267.720 kb on + strand, within EX28DRAFT_3609at 267.721 kb on - strand, within EX28DRAFT_3609at 267.774 kb on + strand, within EX28DRAFT_3609at 267.822 kb on + strand, within EX28DRAFT_3609at 267.850 kb on + strand, within EX28DRAFT_3609at 267.862 kb on + strand, within EX28DRAFT_3609at 267.862 kb on + strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.863 kb on - strand, within EX28DRAFT_3609at 267.976 kb on - strand, within EX28DRAFT_3609at 268.056 kb on + strand, within EX28DRAFT_3609at 268.057 kb on - strand, within EX28DRAFT_3609

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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265,527 - EX28DRAFT_3606 0.80 +0.4
265,543 + EX28DRAFT_3606 0.82 -0.7
265,544 - EX28DRAFT_3606 0.82 -0.4
265,545 + EX28DRAFT_3606 0.82 -1.0
265,546 - EX28DRAFT_3606 0.82 +0.4
265,546 - EX28DRAFT_3606 0.82 -3.4
265,546 - EX28DRAFT_3606 0.82 -3.1
265,702 + -0.4
265,702 + -1.0
265,702 + +0.5
265,702 + -0.4
265,703 - -2.7
265,703 - -2.5
265,703 - +0.5
265,703 - -0.2
265,703 - -1.0
265,703 - +1.1
265,703 - -0.1
265,704 + -1.2
265,704 + +0.3
265,704 + -0.6
265,704 + +0.1
265,704 + -3.4
265,704 + -1.5
265,704 + -0.2
265,704 + -0.6
265,704 + +0.3
265,705 - -1.5
265,705 - +0.2
265,705 - -0.9
265,705 - -0.3
265,705 - +0.4
265,705 - +0.6
265,705 - +0.0
265,719 + -0.7
265,719 + -0.9
265,719 + -2.9
265,756 + +1.1
265,831 - -0.9
265,832 + +2.2
265,837 + +0.3
265,866 + -1.0
266,079 + EX28DRAFT_3607 0.35 -2.4
266,196 - EX28DRAFT_3607 0.60 -1.0
266,224 + EX28DRAFT_3607 0.66 +0.6
266,277 + EX28DRAFT_3607 0.77 -0.1
266,277 + EX28DRAFT_3607 0.77 -0.7
266,277 + EX28DRAFT_3607 0.77 +0.7
266,277 + EX28DRAFT_3607 0.77 -0.2
266,277 + EX28DRAFT_3607 0.77 -0.1
266,305 - EX28DRAFT_3607 0.83 +0.2
266,330 - EX28DRAFT_3607 0.88 +0.3
266,370 - -0.7
266,382 + +0.6
266,382 + -0.1
266,459 + -0.5
266,460 - -0.6
266,460 - +0.9
266,662 - EX28DRAFT_3608 0.38 -1.5
266,699 + EX28DRAFT_3608 0.43 +0.2
266,699 + EX28DRAFT_3608 0.43 -0.7
266,700 - EX28DRAFT_3608 0.44 +0.6
266,700 - EX28DRAFT_3608 0.44 -0.1
266,946 + EX28DRAFT_3608 0.79 -0.7
267,068 + +0.2
267,069 - -0.0
267,176 + +1.0
267,436 + EX28DRAFT_3609 0.24 +0.1
267,532 + EX28DRAFT_3609 0.31 -1.1
267,532 + EX28DRAFT_3609 0.31 +0.2
267,532 + EX28DRAFT_3609 0.31 +0.2
267,532 + EX28DRAFT_3609 0.31 -1.7
267,532 + EX28DRAFT_3609 0.31 +0.5
267,533 - EX28DRAFT_3609 0.31 +2.4
267,533 - EX28DRAFT_3609 0.31 +0.2
267,533 - EX28DRAFT_3609 0.31 -0.7
267,533 - EX28DRAFT_3609 0.31 -0.8
267,533 - EX28DRAFT_3609 0.31 +0.2
267,595 - EX28DRAFT_3609 0.36 +0.6
267,714 + EX28DRAFT_3609 0.44 +0.6
267,714 + EX28DRAFT_3609 0.44 +0.3
267,720 + EX28DRAFT_3609 0.44 -0.9
267,720 + EX28DRAFT_3609 0.44 -0.7
267,721 - EX28DRAFT_3609 0.44 -0.1
267,774 + EX28DRAFT_3609 0.48 -0.2
267,822 + EX28DRAFT_3609 0.52 +0.5
267,850 + EX28DRAFT_3609 0.53 -3.0
267,862 + EX28DRAFT_3609 0.54 -0.0
267,862 + EX28DRAFT_3609 0.54 +0.6
267,863 - EX28DRAFT_3609 0.54 +0.5
267,863 - EX28DRAFT_3609 0.54 -0.9
267,863 - EX28DRAFT_3609 0.54 +0.6
267,863 - EX28DRAFT_3609 0.54 -1.6
267,863 - EX28DRAFT_3609 0.54 -1.0
267,863 - EX28DRAFT_3609 0.54 -0.4
267,976 - EX28DRAFT_3609 0.62 +0.7
268,056 + EX28DRAFT_3609 0.68 +0.5
268,057 - EX28DRAFT_3609 0.68 -1.2

Or see this region's nucleotide sequence