Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3529

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3527 and EX28DRAFT_3528 are separated by 101 nucleotidesEX28DRAFT_3528 and EX28DRAFT_3529 are separated by 47 nucleotidesEX28DRAFT_3529 and EX28DRAFT_3530 are separated by 151 nucleotides EX28DRAFT_3527: EX28DRAFT_3527 - Restriction endonuclease, at 189,948 to 191,130 _3527 EX28DRAFT_3528: EX28DRAFT_3528 - Putative threonine efflux protein, at 191,232 to 191,879 _3528 EX28DRAFT_3529: EX28DRAFT_3529 - AraC-type DNA-binding domain-containing proteins, at 191,927 to 192,670 _3529 EX28DRAFT_3530: EX28DRAFT_3530 - NAD-dependent aldehyde dehydrogenases, at 192,822 to 194,192 _3530 Position (kb) 191 192 193Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 190.962 kb on - strand, within EX28DRAFT_3527at 190.962 kb on - strand, within EX28DRAFT_3527at 190.962 kb on - strand, within EX28DRAFT_3527at 190.962 kb on - strand, within EX28DRAFT_3527at 191.031 kb on + strandat 191.031 kb on + strandat 191.032 kb on - strandat 191.032 kb on - strandat 191.032 kb on - strandat 191.090 kb on + strandat 191.090 kb on + strandat 191.091 kb on - strandat 191.091 kb on - strandat 191.184 kb on - strandat 191.186 kb on + strandat 191.186 kb on + strandat 191.189 kb on + strandat 191.193 kb on + strandat 191.193 kb on + strandat 191.629 kb on + strand, within EX28DRAFT_3528at 191.657 kb on + strand, within EX28DRAFT_3528at 191.657 kb on + strand, within EX28DRAFT_3528at 191.670 kb on - strand, within EX28DRAFT_3528at 191.670 kb on - strand, within EX28DRAFT_3528at 191.713 kb on + strand, within EX28DRAFT_3528at 191.713 kb on + strand, within EX28DRAFT_3528at 191.714 kb on - strand, within EX28DRAFT_3528at 191.714 kb on - strand, within EX28DRAFT_3528at 191.714 kb on - strand, within EX28DRAFT_3528at 191.817 kb on + strandat 191.818 kb on - strandat 191.912 kb on - strandat 191.928 kb on + strandat 191.928 kb on + strandat 191.932 kb on + strandat 191.932 kb on + strandat 191.933 kb on - strandat 191.933 kb on - strandat 191.943 kb on - strandat 191.985 kb on + strandat 191.986 kb on - strandat 192.053 kb on - strand, within EX28DRAFT_3529at 192.346 kb on - strand, within EX28DRAFT_3529at 192.408 kb on + strand, within EX28DRAFT_3529at 192.408 kb on + strand, within EX28DRAFT_3529at 192.409 kb on - strand, within EX28DRAFT_3529at 192.415 kb on + strand, within EX28DRAFT_3529at 192.415 kb on + strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.416 kb on - strand, within EX28DRAFT_3529at 192.420 kb on + strand, within EX28DRAFT_3529at 192.420 kb on + strand, within EX28DRAFT_3529at 192.421 kb on - strand, within EX28DRAFT_3529at 192.504 kb on + strand, within EX28DRAFT_3529at 192.504 kb on + strand, within EX28DRAFT_3529at 192.504 kb on + strand, within EX28DRAFT_3529at 192.504 kb on + strand, within EX28DRAFT_3529at 192.505 kb on - strand, within EX28DRAFT_3529at 192.505 kb on - strand, within EX28DRAFT_3529at 192.505 kb on - strand, within EX28DRAFT_3529at 192.505 kb on - strand, within EX28DRAFT_3529at 192.505 kb on - strand, within EX28DRAFT_3529at 192.595 kb on + strand, within EX28DRAFT_3529at 192.595 kb on + strand, within EX28DRAFT_3529at 192.596 kb on - strandat 192.653 kb on - strandat 192.696 kb on + strandat 192.748 kb on - strandat 192.748 kb on - strandat 192.748 kb on - strandat 192.748 kb on - strandat 192.757 kb on + strandat 192.757 kb on + strandat 192.788 kb on + strandat 192.788 kb on + strandat 192.796 kb on + strandat 192.839 kb on - strandat 192.927 kb on + strandat 192.928 kb on - strandat 192.981 kb on - strand, within EX28DRAFT_3530at 193.101 kb on + strand, within EX28DRAFT_3530at 193.101 kb on + strand, within EX28DRAFT_3530at 193.104 kb on + strand, within EX28DRAFT_3530at 193.144 kb on - strand, within EX28DRAFT_3530at 193.499 kb on + strand, within EX28DRAFT_3530at 193.629 kb on - strand, within EX28DRAFT_3530

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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190,962 - EX28DRAFT_3527 0.86 -0.2
190,962 - EX28DRAFT_3527 0.86 -0.2
190,962 - EX28DRAFT_3527 0.86 -2.3
190,962 - EX28DRAFT_3527 0.86 -1.7
191,031 + +2.2
191,031 + +2.7
191,032 - -0.9
191,032 - +0.0
191,032 - -0.1
191,090 + -0.2
191,090 + +0.2
191,091 - -0.1
191,091 - +0.1
191,184 - +0.1
191,186 + -1.1
191,186 + -0.2
191,189 + -1.2
191,193 + -0.5
191,193 + -0.7
191,629 + EX28DRAFT_3528 0.61 +0.6
191,657 + EX28DRAFT_3528 0.66 -1.5
191,657 + EX28DRAFT_3528 0.66 -0.9
191,670 - EX28DRAFT_3528 0.68 +0.5
191,670 - EX28DRAFT_3528 0.68 -0.2
191,713 + EX28DRAFT_3528 0.74 +0.5
191,713 + EX28DRAFT_3528 0.74 +1.4
191,714 - EX28DRAFT_3528 0.74 +0.3
191,714 - EX28DRAFT_3528 0.74 -0.4
191,714 - EX28DRAFT_3528 0.74 +0.9
191,817 + +0.8
191,818 - -0.3
191,912 - -1.3
191,928 + +1.5
191,928 + -0.3
191,932 + +1.2
191,932 + +2.1
191,933 - +0.3
191,933 - +0.3
191,943 - +0.8
191,985 + +0.7
191,986 - -0.6
192,053 - EX28DRAFT_3529 0.17 -0.1
192,346 - EX28DRAFT_3529 0.56 +0.1
192,408 + EX28DRAFT_3529 0.65 +1.7
192,408 + EX28DRAFT_3529 0.65 +0.9
192,409 - EX28DRAFT_3529 0.65 +0.9
192,415 + EX28DRAFT_3529 0.66 +0.3
192,415 + EX28DRAFT_3529 0.66 +0.7
192,416 - EX28DRAFT_3529 0.66 +0.5
192,416 - EX28DRAFT_3529 0.66 +0.6
192,416 - EX28DRAFT_3529 0.66 +0.5
192,416 - EX28DRAFT_3529 0.66 -1.2
192,416 - EX28DRAFT_3529 0.66 +0.9
192,416 - EX28DRAFT_3529 0.66 -0.4
192,420 + EX28DRAFT_3529 0.66 -0.3
192,420 + EX28DRAFT_3529 0.66 +4.7
192,421 - EX28DRAFT_3529 0.66 +0.9
192,504 + EX28DRAFT_3529 0.78 -0.1
192,504 + EX28DRAFT_3529 0.78 -0.1
192,504 + EX28DRAFT_3529 0.78 -0.1
192,504 + EX28DRAFT_3529 0.78 -0.3
192,505 - EX28DRAFT_3529 0.78 -0.2
192,505 - EX28DRAFT_3529 0.78 -0.9
192,505 - EX28DRAFT_3529 0.78 -0.3
192,505 - EX28DRAFT_3529 0.78 +0.6
192,505 - EX28DRAFT_3529 0.78 +0.2
192,595 + EX28DRAFT_3529 0.90 -1.5
192,595 + EX28DRAFT_3529 0.90 +0.3
192,596 - +0.1
192,653 - +0.0
192,696 + -0.3
192,748 - -2.1
192,748 - -0.8
192,748 - +0.2
192,748 - +0.2
192,757 + -0.4
192,757 + -0.6
192,788 + -0.3
192,788 + -0.3
192,796 + -0.9
192,839 - +0.2
192,927 + +0.2
192,928 - -0.9
192,981 - EX28DRAFT_3530 0.12 -0.3
193,101 + EX28DRAFT_3530 0.20 +0.3
193,101 + EX28DRAFT_3530 0.20 -0.3
193,104 + EX28DRAFT_3530 0.21 +0.2
193,144 - EX28DRAFT_3530 0.23 -1.5
193,499 + EX28DRAFT_3530 0.49 -0.7
193,629 - EX28DRAFT_3530 0.59 +0.3

Or see this region's nucleotide sequence