Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3452 and EX28DRAFT_3453 are separated by 675 nucleotides EX28DRAFT_3453 and EX28DRAFT_3454 are separated by 203 nucleotides
EX28DRAFT_3452: EX28DRAFT_3452 - arginine deiminase (EC 3.5.3.6), at 124,170 to 125,390
_3452
EX28DRAFT_3453: EX28DRAFT_3453 - YhcH/YjgK/YiaL family protein, at 126,066 to 126,518
_3453
EX28DRAFT_3454: EX28DRAFT_3454 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 126,722 to 127,630
_3454
Position (kb) 126
127 Strain fitness (log2 ratio) -2
-1
0
1
2 at 125.378 kb on - strand at 125.597 kb on - strand at 125.866 kb on + strand at 125.916 kb on + strand at 125.916 kb on + strand at 125.917 kb on - strand at 125.917 kb on - strand at 126.202 kb on - strand, within EX28DRAFT_3453 at 126.489 kb on - strand at 126.526 kb on + strand at 126.631 kb on + strand at 126.632 kb on - strand at 126.653 kb on + strand at 126.653 kb on + strand at 126.654 kb on - strand at 126.654 kb on - strand at 126.656 kb on + strand at 126.656 kb on + strand at 126.656 kb on + strand at 126.657 kb on - strand at 126.657 kb on - strand at 126.657 kb on - strand at 126.657 kb on - strand at 126.904 kb on + strand, within EX28DRAFT_3454 at 127.052 kb on + strand, within EX28DRAFT_3454 at 127.055 kb on + strand, within EX28DRAFT_3454 at 127.056 kb on - strand, within EX28DRAFT_3454 at 127.134 kb on - strand, within EX28DRAFT_3454 at 127.135 kb on + strand, within EX28DRAFT_3454 at 127.135 kb on + strand, within EX28DRAFT_3454 at 127.180 kb on - strand, within EX28DRAFT_3454 at 127.208 kb on - strand, within EX28DRAFT_3454 at 127.208 kb on - strand, within EX28DRAFT_3454 at 127.327 kb on + strand, within EX28DRAFT_3454 at 127.327 kb on + strand, within EX28DRAFT_3454 at 127.443 kb on - strand, within EX28DRAFT_3454 at 127.475 kb on + strand, within EX28DRAFT_3454
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 125,378 - +0.5 125,597 - +0.4 125,866 + +0.1 125,916 + +0.6 125,916 + +0.5 125,917 - -1.8 125,917 - -0.8 126,202 - EX28DRAFT_3453 0.30 +1.9 126,489 - +0.3 126,526 + +1.1 126,631 + -2.3 126,632 - -1.4 126,653 + +0.5 126,653 + +0.2 126,654 - +0.2 126,654 - +1.3 126,656 + -0.1 126,656 + +1.1 126,656 + -0.4 126,657 - +0.3 126,657 - -1.9 126,657 - -0.1 126,657 - -1.0 126,904 + EX28DRAFT_3454 0.20 -1.0 127,052 + EX28DRAFT_3454 0.36 -0.8 127,055 + EX28DRAFT_3454 0.37 -1.6 127,056 - EX28DRAFT_3454 0.37 +0.8 127,134 - EX28DRAFT_3454 0.45 +1.1 127,135 + EX28DRAFT_3454 0.45 +0.1 127,135 + EX28DRAFT_3454 0.45 -1.0 127,180 - EX28DRAFT_3454 0.50 -2.2 127,208 - EX28DRAFT_3454 0.53 -1.3 127,208 - EX28DRAFT_3454 0.53 -0.0 127,327 + EX28DRAFT_3454 0.67 +1.2 127,327 + EX28DRAFT_3454 0.67 +0.1 127,443 - EX28DRAFT_3454 0.79 -0.3 127,475 + EX28DRAFT_3454 0.83 -0.5
Or see this region's nucleotide sequence