Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3427 and EX28DRAFT_3428 are separated by 13 nucleotides EX28DRAFT_3428 and EX28DRAFT_3429 are separated by 42 nucleotides EX28DRAFT_3429 and EX28DRAFT_3430 overlap by 17 nucleotides
EX28DRAFT_3427: EX28DRAFT_3427 - conserved hypothetical protein EF_0832/AHA_3913, at 96,803 to 97,579
_3427
EX28DRAFT_3428: EX28DRAFT_3428 - conserved hypothetical protein EF_0833/AHA_3914, at 97,593 to 98,234
_3428
EX28DRAFT_3429: EX28DRAFT_3429 - probable amidohydrolase EF_0837/AHA_3915, at 98,277 to 99,410
_3429
EX28DRAFT_3430: EX28DRAFT_3430 - uncharacterized pyridoxal phosphate-dependent enzyme, at 99,394 to 100,512
_3430
Position (kb) 98
99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 97.528 kb on + strand at 97.529 kb on - strand at 97.577 kb on + strand at 97.578 kb on - strand at 97.590 kb on + strand at 97.590 kb on + strand at 97.591 kb on - strand at 97.591 kb on - strand at 97.604 kb on + strand at 97.604 kb on + strand at 97.605 kb on - strand at 97.618 kb on - strand at 97.686 kb on + strand, within EX28DRAFT_3428 at 97.686 kb on + strand, within EX28DRAFT_3428 at 97.686 kb on + strand, within EX28DRAFT_3428 at 97.686 kb on + strand, within EX28DRAFT_3428 at 97.687 kb on - strand, within EX28DRAFT_3428 at 97.687 kb on - strand, within EX28DRAFT_3428 at 97.689 kb on + strand, within EX28DRAFT_3428 at 97.689 kb on + strand, within EX28DRAFT_3428 at 97.690 kb on - strand, within EX28DRAFT_3428 at 97.690 kb on - strand, within EX28DRAFT_3428 at 97.974 kb on + strand, within EX28DRAFT_3428 at 98.026 kb on - strand, within EX28DRAFT_3428 at 98.154 kb on + strand, within EX28DRAFT_3428 at 98.155 kb on - strand, within EX28DRAFT_3428 at 98.155 kb on - strand, within EX28DRAFT_3428 at 98.288 kb on - strand at 98.288 kb on - strand at 98.565 kb on + strand, within EX28DRAFT_3429 at 98.596 kb on + strand, within EX28DRAFT_3429 at 98.597 kb on - strand, within EX28DRAFT_3429 at 98.663 kb on + strand, within EX28DRAFT_3429 at 98.712 kb on - strand, within EX28DRAFT_3429 at 99.077 kb on + strand, within EX28DRAFT_3429 at 99.077 kb on + strand, within EX28DRAFT_3429 at 99.081 kb on + strand, within EX28DRAFT_3429 at 99.127 kb on + strand, within EX28DRAFT_3429 at 99.128 kb on - strand, within EX28DRAFT_3429 at 99.128 kb on - strand, within EX28DRAFT_3429 at 99.218 kb on + strand, within EX28DRAFT_3429 at 99.366 kb on + strand at 99.423 kb on - strand at 99.559 kb on + strand, within EX28DRAFT_3430 at 99.559 kb on + strand, within EX28DRAFT_3430 at 99.559 kb on + strand, within EX28DRAFT_3430 at 99.560 kb on - strand, within EX28DRAFT_3430 at 100.015 kb on + strand, within EX28DRAFT_3430 at 100.015 kb on + strand, within EX28DRAFT_3430 at 100.016 kb on - strand, within EX28DRAFT_3430 at 100.075 kb on + strand, within EX28DRAFT_3430 at 100.171 kb on + strand, within EX28DRAFT_3430 at 100.172 kb on - strand, within EX28DRAFT_3430 at 100.378 kb on + strand, within EX28DRAFT_3430 at 100.387 kb on + strand, within EX28DRAFT_3430 at 100.388 kb on - strand, within EX28DRAFT_3430 at 100.388 kb on - strand, within EX28DRAFT_3430 at 100.399 kb on + strand, within EX28DRAFT_3430
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 97,528 + -0.1 97,529 - -0.3 97,577 + +0.2 97,578 - -0.5 97,590 + -1.2 97,590 + +0.7 97,591 - -2.3 97,591 - -1.0 97,604 + -0.5 97,604 + +0.2 97,605 - -0.0 97,618 - -1.0 97,686 + EX28DRAFT_3428 0.14 -0.7 97,686 + EX28DRAFT_3428 0.14 -0.8 97,686 + EX28DRAFT_3428 0.14 -0.1 97,686 + EX28DRAFT_3428 0.14 +0.4 97,687 - EX28DRAFT_3428 0.15 -0.1 97,687 - EX28DRAFT_3428 0.15 -0.1 97,689 + EX28DRAFT_3428 0.15 +0.2 97,689 + EX28DRAFT_3428 0.15 +0.1 97,690 - EX28DRAFT_3428 0.15 -0.1 97,690 - EX28DRAFT_3428 0.15 -0.2 97,974 + EX28DRAFT_3428 0.59 +0.7 98,026 - EX28DRAFT_3428 0.67 -0.9 98,154 + EX28DRAFT_3428 0.87 +1.1 98,155 - EX28DRAFT_3428 0.88 +0.8 98,155 - EX28DRAFT_3428 0.88 -2.5 98,288 - -0.0 98,288 - -0.9 98,565 + EX28DRAFT_3429 0.25 +0.3 98,596 + EX28DRAFT_3429 0.28 -2.9 98,597 - EX28DRAFT_3429 0.28 -0.3 98,663 + EX28DRAFT_3429 0.34 -2.1 98,712 - EX28DRAFT_3429 0.38 -1.1 99,077 + EX28DRAFT_3429 0.71 -1.4 99,077 + EX28DRAFT_3429 0.71 -0.0 99,081 + EX28DRAFT_3429 0.71 -0.5 99,127 + EX28DRAFT_3429 0.75 +0.3 99,128 - EX28DRAFT_3429 0.75 -0.7 99,128 - EX28DRAFT_3429 0.75 -0.1 99,218 + EX28DRAFT_3429 0.83 +1.2 99,366 + -0.4 99,423 - -0.5 99,559 + EX28DRAFT_3430 0.15 -0.1 99,559 + EX28DRAFT_3430 0.15 -0.5 99,559 + EX28DRAFT_3430 0.15 +0.0 99,560 - EX28DRAFT_3430 0.15 +0.6 100,015 + EX28DRAFT_3430 0.55 -0.3 100,015 + EX28DRAFT_3430 0.55 -0.9 100,016 - EX28DRAFT_3430 0.56 -1.4 100,075 + EX28DRAFT_3430 0.61 -0.9 100,171 + EX28DRAFT_3430 0.69 +0.3 100,172 - EX28DRAFT_3430 0.70 -0.4 100,378 + EX28DRAFT_3430 0.88 +0.4 100,387 + EX28DRAFT_3430 0.89 -0.3 100,388 - EX28DRAFT_3430 0.89 +3.8 100,388 - EX28DRAFT_3430 0.89 +0.5 100,399 + EX28DRAFT_3430 0.90 +0.3
Or see this region's nucleotide sequence