Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3370 and EX28DRAFT_3371 are separated by 56 nucleotides EX28DRAFT_3371 and EX28DRAFT_3372 are separated by 2 nucleotides
EX28DRAFT_3370: EX28DRAFT_3370 - GTP-binding protein HflX, at 37,975 to 39,255
_3370
EX28DRAFT_3371: EX28DRAFT_3371 - HflK protein, at 39,312 to 40,571
_3371
EX28DRAFT_3372: EX28DRAFT_3372 - HflC protein, at 40,574 to 41,578
_3372
Position (kb) 39
40
41 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 38.322 kb on + strand, within EX28DRAFT_3370 at 38.689 kb on - strand, within EX28DRAFT_3370 at 38.740 kb on - strand, within EX28DRAFT_3370 at 38.934 kb on + strand, within EX28DRAFT_3370 at 38.935 kb on - strand, within EX28DRAFT_3370 at 39.189 kb on + strand at 39.190 kb on - strand at 39.244 kb on + strand at 39.244 kb on + strand at 39.245 kb on - strand at 39.247 kb on - strand at 39.307 kb on + strand at 39.307 kb on + strand at 39.307 kb on + strand at 39.308 kb on - strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.309 kb on + strand at 39.310 kb on - strand at 39.333 kb on - strand at 39.903 kb on + strand, within EX28DRAFT_3371 at 39.904 kb on - strand, within EX28DRAFT_3371 at 39.988 kb on - strand, within EX28DRAFT_3371 at 39.998 kb on + strand, within EX28DRAFT_3371 at 39.998 kb on + strand, within EX28DRAFT_3371 at 40.098 kb on + strand, within EX28DRAFT_3371 at 40.120 kb on - strand, within EX28DRAFT_3371 at 40.185 kb on + strand, within EX28DRAFT_3371 at 40.188 kb on - strand, within EX28DRAFT_3371 at 40.251 kb on + strand, within EX28DRAFT_3371 at 40.252 kb on - strand, within EX28DRAFT_3371 at 40.580 kb on - strand at 40.588 kb on + strand at 40.623 kb on - strand at 40.625 kb on - strand at 40.664 kb on - strand at 40.664 kb on - strand at 40.716 kb on - strand, within EX28DRAFT_3372 at 40.847 kb on + strand, within EX28DRAFT_3372 at 40.848 kb on - strand, within EX28DRAFT_3372 at 40.937 kb on - strand, within EX28DRAFT_3372 at 40.937 kb on - strand, within EX28DRAFT_3372 at 41.200 kb on + strand, within EX28DRAFT_3372 at 41.453 kb on + strand, within EX28DRAFT_3372 at 41.548 kb on + strand at 41.549 kb on - strand at 41.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 38,322 + EX28DRAFT_3370 0.27 -0.0 38,689 - EX28DRAFT_3370 0.56 +0.0 38,740 - EX28DRAFT_3370 0.60 -0.9 38,934 + EX28DRAFT_3370 0.75 -0.8 38,935 - EX28DRAFT_3370 0.75 +2.1 39,189 + -0.6 39,190 - -1.1 39,244 + -0.3 39,244 + +0.4 39,245 - -1.7 39,247 - -1.5 39,307 + -0.7 39,307 + -1.5 39,307 + -0.4 39,308 - -0.0 39,309 + -0.2 39,309 + -0.4 39,309 + -0.5 39,309 + +0.8 39,309 + +0.2 39,309 + +0.8 39,309 + -0.4 39,309 + -0.8 39,310 - -1.3 39,333 - -2.2 39,903 + EX28DRAFT_3371 0.47 -0.2 39,904 - EX28DRAFT_3371 0.47 -5.4 39,988 - EX28DRAFT_3371 0.54 -0.0 39,998 + EX28DRAFT_3371 0.54 +1.0 39,998 + EX28DRAFT_3371 0.54 +0.3 40,098 + EX28DRAFT_3371 0.62 +1.4 40,120 - EX28DRAFT_3371 0.64 +0.6 40,185 + EX28DRAFT_3371 0.69 -1.4 40,188 - EX28DRAFT_3371 0.70 +0.1 40,251 + EX28DRAFT_3371 0.75 -2.5 40,252 - EX28DRAFT_3371 0.75 -1.6 40,580 - +0.5 40,588 + -0.1 40,623 - -0.3 40,625 - +1.2 40,664 - -0.8 40,664 - -0.0 40,716 - EX28DRAFT_3372 0.14 -0.3 40,847 + EX28DRAFT_3372 0.27 -1.9 40,848 - EX28DRAFT_3372 0.27 -1.2 40,937 - EX28DRAFT_3372 0.36 -0.5 40,937 - EX28DRAFT_3372 0.36 -1.7 41,200 + EX28DRAFT_3372 0.62 -0.7 41,453 + EX28DRAFT_3372 0.87 +1.8 41,548 + +0.1 41,549 - -1.6 41,549 - -0.4
Or see this region's nucleotide sequence