Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3286

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3285 and EX28DRAFT_3286 are separated by 397 nucleotidesEX28DRAFT_3286 and EX28DRAFT_3287 are separated by 375 nucleotidesEX28DRAFT_3287 and EX28DRAFT_3288 are separated by 111 nucleotides EX28DRAFT_3285: EX28DRAFT_3285 - malate dehydrogenase (NAD) (EC 1.1.1.37), at 582,779 to 583,717 _3285 EX28DRAFT_3286: EX28DRAFT_3286 - transcriptional regulator, ArgR family, at 584,115 to 584,585 _3286 EX28DRAFT_3287: EX28DRAFT_3287 - Protein of unknown function (DUF1471), at 584,961 to 585,224 _3287 EX28DRAFT_3288: EX28DRAFT_3288 - Protein of unknown function (DUF1471), at 585,336 to 585,602 _3288 Position (kb) 584 585Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 583.174 kb on + strand, within EX28DRAFT_3285at 583.175 kb on - strand, within EX28DRAFT_3285at 583.206 kb on - strand, within EX28DRAFT_3285at 583.620 kb on + strand, within EX28DRAFT_3285at 583.621 kb on - strand, within EX28DRAFT_3285at 583.662 kb on - strandat 583.733 kb on - strandat 583.733 kb on - strandat 583.739 kb on - strandat 583.743 kb on + strandat 583.743 kb on + strandat 583.744 kb on - strandat 583.744 kb on - strandat 583.748 kb on - strandat 583.754 kb on - strandat 583.785 kb on + strandat 583.786 kb on - strandat 583.834 kb on - strandat 583.892 kb on + strandat 583.893 kb on - strandat 583.893 kb on - strandat 583.936 kb on + strandat 584.018 kb on + strandat 584.018 kb on + strandat 584.025 kb on - strandat 584.100 kb on + strandat 584.100 kb on + strandat 584.101 kb on - strandat 584.101 kb on - strandat 584.114 kb on + strandat 584.147 kb on - strandat 584.313 kb on + strand, within EX28DRAFT_3286at 584.769 kb on + strandat 584.769 kb on + strandat 584.953 kb on + strandat 584.954 kb on - strandat 585.035 kb on + strand, within EX28DRAFT_3287at 585.217 kb on - strandat 585.230 kb on - strandat 585.231 kb on - strandat 585.318 kb on + strandat 585.329 kb on - strandat 585.329 kb on - strandat 585.335 kb on + strandat 585.416 kb on - strand, within EX28DRAFT_3288at 585.439 kb on + strand, within EX28DRAFT_3288at 585.446 kb on + strand, within EX28DRAFT_3288at 585.447 kb on - strand, within EX28DRAFT_3288at 585.447 kb on - strand, within EX28DRAFT_3288

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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583,174 + EX28DRAFT_3285 0.42 -3.2
583,175 - EX28DRAFT_3285 0.42 -1.3
583,206 - EX28DRAFT_3285 0.45 -1.9
583,620 + EX28DRAFT_3285 0.90 -3.2
583,621 - EX28DRAFT_3285 0.90 +0.2
583,662 - -1.9
583,733 - -2.1
583,733 - -2.6
583,739 - -0.4
583,743 + -0.8
583,743 + -0.1
583,744 - -0.6
583,744 - -0.2
583,748 - +0.8
583,754 - -1.4
583,785 + -0.9
583,786 - -0.3
583,834 - -1.5
583,892 + -1.5
583,893 - -0.2
583,893 - +0.7
583,936 + -1.8
584,018 + +4.8
584,018 + -1.6
584,025 - +0.3
584,100 + -1.2
584,100 + -1.6
584,101 - -2.2
584,101 - -0.8
584,114 + -1.7
584,147 - +0.1
584,313 + EX28DRAFT_3286 0.42 +0.2
584,769 + -3.3
584,769 + +0.3
584,953 + -0.6
584,954 - +0.7
585,035 + EX28DRAFT_3287 0.28 -0.1
585,217 - -1.6
585,230 - -1.0
585,231 - -0.1
585,318 + +1.0
585,329 - +0.3
585,329 - -0.3
585,335 + -0.3
585,416 - EX28DRAFT_3288 0.30 -0.2
585,439 + EX28DRAFT_3288 0.39 +0.3
585,446 + EX28DRAFT_3288 0.41 -3.8
585,447 - EX28DRAFT_3288 0.42 +0.6
585,447 - EX28DRAFT_3288 0.42 -1.8

Or see this region's nucleotide sequence