Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3285 and EX28DRAFT_3286 are separated by 397 nucleotides EX28DRAFT_3286 and EX28DRAFT_3287 are separated by 375 nucleotides EX28DRAFT_3287 and EX28DRAFT_3288 are separated by 111 nucleotides
EX28DRAFT_3285: EX28DRAFT_3285 - malate dehydrogenase (NAD) (EC 1.1.1.37), at 582,779 to 583,717
_3285
EX28DRAFT_3286: EX28DRAFT_3286 - transcriptional regulator, ArgR family, at 584,115 to 584,585
_3286
EX28DRAFT_3287: EX28DRAFT_3287 - Protein of unknown function (DUF1471), at 584,961 to 585,224
_3287
EX28DRAFT_3288: EX28DRAFT_3288 - Protein of unknown function (DUF1471), at 585,336 to 585,602
_3288
Position (kb)
584
585 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 583.174 kb on + strand, within EX28DRAFT_3285 at 583.175 kb on - strand, within EX28DRAFT_3285 at 583.206 kb on - strand, within EX28DRAFT_3285 at 583.620 kb on + strand, within EX28DRAFT_3285 at 583.621 kb on - strand, within EX28DRAFT_3285 at 583.662 kb on - strand at 583.733 kb on - strand at 583.733 kb on - strand at 583.739 kb on - strand at 583.743 kb on + strand at 583.743 kb on + strand at 583.744 kb on - strand at 583.744 kb on - strand at 583.748 kb on - strand at 583.754 kb on - strand at 583.785 kb on + strand at 583.786 kb on - strand at 583.834 kb on - strand at 583.892 kb on + strand at 583.893 kb on - strand at 583.893 kb on - strand at 583.936 kb on + strand at 584.018 kb on + strand at 584.018 kb on + strand at 584.025 kb on - strand at 584.100 kb on + strand at 584.100 kb on + strand at 584.101 kb on - strand at 584.101 kb on - strand at 584.114 kb on + strand at 584.147 kb on - strand at 584.313 kb on + strand, within EX28DRAFT_3286 at 584.769 kb on + strand at 584.769 kb on + strand at 584.953 kb on + strand at 584.954 kb on - strand at 585.035 kb on + strand, within EX28DRAFT_3287 at 585.217 kb on - strand at 585.230 kb on - strand at 585.231 kb on - strand at 585.318 kb on + strand at 585.329 kb on - strand at 585.329 kb on - strand at 585.335 kb on + strand at 585.416 kb on - strand, within EX28DRAFT_3288 at 585.439 kb on + strand, within EX28DRAFT_3288 at 585.446 kb on + strand, within EX28DRAFT_3288 at 585.447 kb on - strand, within EX28DRAFT_3288 at 585.447 kb on - strand, within EX28DRAFT_3288
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 583,174 + EX28DRAFT_3285 0.42 -3.2 583,175 - EX28DRAFT_3285 0.42 -1.3 583,206 - EX28DRAFT_3285 0.45 -1.9 583,620 + EX28DRAFT_3285 0.90 -3.2 583,621 - EX28DRAFT_3285 0.90 +0.2 583,662 - -1.9 583,733 - -2.1 583,733 - -2.6 583,739 - -0.4 583,743 + -0.8 583,743 + -0.1 583,744 - -0.6 583,744 - -0.2 583,748 - +0.8 583,754 - -1.4 583,785 + -0.9 583,786 - -0.3 583,834 - -1.5 583,892 + -1.5 583,893 - -0.2 583,893 - +0.7 583,936 + -1.8 584,018 + +4.8 584,018 + -1.6 584,025 - +0.3 584,100 + -1.2 584,100 + -1.6 584,101 - -2.2 584,101 - -0.8 584,114 + -1.7 584,147 - +0.1 584,313 + EX28DRAFT_3286 0.42 +0.2 584,769 + -3.3 584,769 + +0.3 584,953 + -0.6 584,954 - +0.7 585,035 + EX28DRAFT_3287 0.28 -0.1 585,217 - -1.6 585,230 - -1.0 585,231 - -0.1 585,318 + +1.0 585,329 - +0.3 585,329 - -0.3 585,335 + -0.3 585,416 - EX28DRAFT_3288 0.30 -0.2 585,439 + EX28DRAFT_3288 0.39 +0.3 585,446 + EX28DRAFT_3288 0.41 -3.8 585,447 - EX28DRAFT_3288 0.42 +0.6 585,447 - EX28DRAFT_3288 0.42 -1.8
Or see this region's nucleotide sequence