Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3283 and EX28DRAFT_3284 are separated by 91 nucleotides EX28DRAFT_3284 and EX28DRAFT_3285 are separated by 56 nucleotides
EX28DRAFT_3283: EX28DRAFT_3283 - periplasmic serine protease, Do/DeqQ family, at 580,196 to 581,563
_3283
EX28DRAFT_3284: EX28DRAFT_3284 - periplasmic serine pepetdase DegS, at 581,655 to 582,722
_3284
EX28DRAFT_3285: EX28DRAFT_3285 - malate dehydrogenase (NAD) (EC 1.1.1.37), at 582,779 to 583,717
_3285
Position (kb) 581
582
583 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 580.802 kb on - strand, within EX28DRAFT_3283 at 581.008 kb on + strand, within EX28DRAFT_3283 at 581.009 kb on - strand, within EX28DRAFT_3283 at 581.058 kb on + strand, within EX28DRAFT_3283 at 581.232 kb on + strand, within EX28DRAFT_3283 at 581.233 kb on - strand, within EX28DRAFT_3283 at 581.272 kb on + strand, within EX28DRAFT_3283 at 581.372 kb on - strand, within EX28DRAFT_3283 at 581.467 kb on + strand at 581.468 kb on - strand at 581.546 kb on + strand at 581.546 kb on + strand at 581.547 kb on - strand at 581.547 kb on - strand at 581.547 kb on - strand at 581.547 kb on - strand at 581.616 kb on + strand at 582.746 kb on - strand at 582.746 kb on - strand at 582.883 kb on + strand, within EX28DRAFT_3285 at 582.960 kb on + strand, within EX28DRAFT_3285 at 582.961 kb on - strand, within EX28DRAFT_3285 at 582.961 kb on - strand, within EX28DRAFT_3285 at 583.174 kb on + strand, within EX28DRAFT_3285 at 583.175 kb on - strand, within EX28DRAFT_3285 at 583.206 kb on - strand, within EX28DRAFT_3285 at 583.620 kb on + strand, within EX28DRAFT_3285 at 583.621 kb on - strand, within EX28DRAFT_3285 at 583.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 580,802 - EX28DRAFT_3283 0.44 -0.5 581,008 + EX28DRAFT_3283 0.59 -2.1 581,009 - EX28DRAFT_3283 0.59 +1.3 581,058 + EX28DRAFT_3283 0.63 +0.3 581,232 + EX28DRAFT_3283 0.76 +0.9 581,233 - EX28DRAFT_3283 0.76 -1.0 581,272 + EX28DRAFT_3283 0.79 -2.7 581,372 - EX28DRAFT_3283 0.86 -3.4 581,467 + +0.8 581,468 - -1.3 581,546 + -1.1 581,546 + +0.1 581,547 - -1.6 581,547 - +1.2 581,547 - +0.4 581,547 - -0.2 581,616 + +0.6 582,746 - -0.7 582,746 - -0.8 582,883 + EX28DRAFT_3285 0.11 -2.6 582,960 + EX28DRAFT_3285 0.19 -2.0 582,961 - EX28DRAFT_3285 0.19 -1.5 582,961 - EX28DRAFT_3285 0.19 -3.0 583,174 + EX28DRAFT_3285 0.42 -3.2 583,175 - EX28DRAFT_3285 0.42 -1.3 583,206 - EX28DRAFT_3285 0.45 -1.9 583,620 + EX28DRAFT_3285 0.90 -3.2 583,621 - EX28DRAFT_3285 0.90 +0.2 583,662 - -1.9
Or see this region's nucleotide sequence