Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3218

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3217 and EX28DRAFT_3218 overlap by 1 nucleotidesEX28DRAFT_3218 and EX28DRAFT_3219 are separated by 89 nucleotides EX28DRAFT_3217: EX28DRAFT_3217 - tRNA pseudouridine(55) synthase, at 515,745 to 516,695 _3217 EX28DRAFT_3218: EX28DRAFT_3218 - ribosome-binding factor A, at 516,695 to 517,099 _3218 EX28DRAFT_3219: EX28DRAFT_3219 - translation initiation factor IF-2, at 517,189 to 519,876 _3219 Position (kb) 516 517 518Strain fitness (log2 ratio) -2 -1 0 1 2at 515.854 kb on - strand, within EX28DRAFT_3217at 516.027 kb on + strand, within EX28DRAFT_3217at 516.028 kb on - strand, within EX28DRAFT_3217at 516.101 kb on - strand, within EX28DRAFT_3217at 516.101 kb on - strand, within EX28DRAFT_3217at 516.101 kb on - strand, within EX28DRAFT_3217at 516.160 kb on + strand, within EX28DRAFT_3217at 516.160 kb on + strand, within EX28DRAFT_3217at 516.160 kb on + strand, within EX28DRAFT_3217at 516.161 kb on - strand, within EX28DRAFT_3217at 516.161 kb on - strand, within EX28DRAFT_3217at 516.161 kb on - strand, within EX28DRAFT_3217at 516.181 kb on - strand, within EX28DRAFT_3217at 516.230 kb on - strand, within EX28DRAFT_3217at 516.230 kb on - strand, within EX28DRAFT_3217at 516.281 kb on - strand, within EX28DRAFT_3217at 516.566 kb on + strand, within EX28DRAFT_3217at 516.589 kb on + strand, within EX28DRAFT_3217at 516.589 kb on + strand, within EX28DRAFT_3217at 516.593 kb on + strand, within EX28DRAFT_3217at 516.594 kb on - strand, within EX28DRAFT_3217at 516.594 kb on - strand, within EX28DRAFT_3217

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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515,854 - EX28DRAFT_3217 0.11 -0.9
516,027 + EX28DRAFT_3217 0.30 -1.7
516,028 - EX28DRAFT_3217 0.30 -0.2
516,101 - EX28DRAFT_3217 0.37 +0.4
516,101 - EX28DRAFT_3217 0.37 -1.4
516,101 - EX28DRAFT_3217 0.37 -0.6
516,160 + EX28DRAFT_3217 0.44 -0.8
516,160 + EX28DRAFT_3217 0.44 -0.4
516,160 + EX28DRAFT_3217 0.44 -0.2
516,161 - EX28DRAFT_3217 0.44 +0.9
516,161 - EX28DRAFT_3217 0.44 -1.5
516,161 - EX28DRAFT_3217 0.44 -0.4
516,181 - EX28DRAFT_3217 0.46 -1.7
516,230 - EX28DRAFT_3217 0.51 +2.2
516,230 - EX28DRAFT_3217 0.51 +1.3
516,281 - EX28DRAFT_3217 0.56 -1.4
516,566 + EX28DRAFT_3217 0.86 -0.1
516,589 + EX28DRAFT_3217 0.89 -0.4
516,589 + EX28DRAFT_3217 0.89 -1.1
516,593 + EX28DRAFT_3217 0.89 -2.4
516,594 - EX28DRAFT_3217 0.89 +0.7
516,594 - EX28DRAFT_3217 0.89 +0.2

Or see this region's nucleotide sequence