Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3207 and EX28DRAFT_3208 are separated by 7 nucleotides EX28DRAFT_3208 and EX28DRAFT_3209 are separated by 78 nucleotides
EX28DRAFT_3207: EX28DRAFT_3207 - Collagenase and related proteases, at 505,454 to 506,449
_3207
EX28DRAFT_3208: EX28DRAFT_3208 - Collagenase and related proteases, at 506,457 to 507,335
_3208
EX28DRAFT_3209: EX28DRAFT_3209 - luciferase family oxidoreductase, group 1, at 507,414 to 508,421
_3209
Position (kb) 506
507
508 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 505.493 kb on - strand at 505.526 kb on + strand at 505.526 kb on + strand at 505.526 kb on + strand at 505.527 kb on - strand at 505.527 kb on - strand at 505.649 kb on + strand, within EX28DRAFT_3207 at 505.652 kb on - strand, within EX28DRAFT_3207 at 505.757 kb on + strand, within EX28DRAFT_3207 at 505.773 kb on - strand, within EX28DRAFT_3207 at 505.982 kb on + strand, within EX28DRAFT_3207 at 505.983 kb on - strand, within EX28DRAFT_3207 at 505.983 kb on - strand, within EX28DRAFT_3207 at 505.983 kb on - strand, within EX28DRAFT_3207 at 505.983 kb on - strand, within EX28DRAFT_3207 at 505.994 kb on + strand, within EX28DRAFT_3207 at 505.995 kb on - strand, within EX28DRAFT_3207 at 505.995 kb on - strand, within EX28DRAFT_3207 at 505.995 kb on - strand, within EX28DRAFT_3207 at 506.291 kb on + strand, within EX28DRAFT_3207 at 506.329 kb on - strand, within EX28DRAFT_3207 at 506.357 kb on + strand at 506.358 kb on - strand at 506.358 kb on - strand at 506.358 kb on - strand at 506.430 kb on - strand at 506.438 kb on - strand at 506.463 kb on + strand at 506.463 kb on + strand at 506.464 kb on - strand at 506.464 kb on - strand at 506.484 kb on + strand at 506.484 kb on + strand at 506.774 kb on + strand, within EX28DRAFT_3208 at 506.811 kb on + strand, within EX28DRAFT_3208 at 506.961 kb on + strand, within EX28DRAFT_3208 at 506.961 kb on + strand, within EX28DRAFT_3208 at 507.051 kb on - strand, within EX28DRAFT_3208 at 507.051 kb on - strand, within EX28DRAFT_3208 at 507.055 kb on - strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.138 kb on + strand, within EX28DRAFT_3208 at 507.139 kb on - strand, within EX28DRAFT_3208 at 507.139 kb on - strand, within EX28DRAFT_3208 at 507.139 kb on - strand, within EX28DRAFT_3208 at 507.380 kb on + strand at 507.384 kb on - strand at 507.413 kb on + strand at 507.413 kb on + strand at 507.566 kb on + strand, within EX28DRAFT_3209 at 507.566 kb on + strand, within EX28DRAFT_3209 at 507.567 kb on - strand, within EX28DRAFT_3209 at 507.567 kb on - strand, within EX28DRAFT_3209 at 507.623 kb on + strand, within EX28DRAFT_3209 at 507.624 kb on - strand, within EX28DRAFT_3209 at 507.624 kb on - strand, within EX28DRAFT_3209 at 507.624 kb on - strand, within EX28DRAFT_3209 at 507.736 kb on + strand, within EX28DRAFT_3209 at 508.083 kb on - strand, within EX28DRAFT_3209 at 508.131 kb on - strand, within EX28DRAFT_3209 at 508.233 kb on + strand, within EX28DRAFT_3209 at 508.334 kb on + strand at 508.334 kb on + strand at 508.334 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 505,493 - -3.3 505,526 + +0.0 505,526 + -0.2 505,526 + -0.7 505,527 - -0.6 505,527 - +0.3 505,649 + EX28DRAFT_3207 0.20 -0.7 505,652 - EX28DRAFT_3207 0.20 +0.0 505,757 + EX28DRAFT_3207 0.30 +0.9 505,773 - EX28DRAFT_3207 0.32 +4.4 505,982 + EX28DRAFT_3207 0.53 +0.6 505,983 - EX28DRAFT_3207 0.53 -1.0 505,983 - EX28DRAFT_3207 0.53 +0.9 505,983 - EX28DRAFT_3207 0.53 -2.4 505,983 - EX28DRAFT_3207 0.53 -0.8 505,994 + EX28DRAFT_3207 0.54 +0.3 505,995 - EX28DRAFT_3207 0.54 +0.9 505,995 - EX28DRAFT_3207 0.54 +0.7 505,995 - EX28DRAFT_3207 0.54 -0.4 506,291 + EX28DRAFT_3207 0.84 -2.0 506,329 - EX28DRAFT_3207 0.88 -1.3 506,357 + +0.3 506,358 - +0.5 506,358 - -0.1 506,358 - +1.1 506,430 - +4.5 506,438 - -1.4 506,463 + +0.1 506,463 + +1.2 506,464 - -0.4 506,464 - +0.8 506,484 + -0.2 506,484 + -0.6 506,774 + EX28DRAFT_3208 0.36 -0.5 506,811 + EX28DRAFT_3208 0.40 +0.6 506,961 + EX28DRAFT_3208 0.57 +4.7 506,961 + EX28DRAFT_3208 0.57 +0.2 507,051 - EX28DRAFT_3208 0.68 -0.4 507,051 - EX28DRAFT_3208 0.68 +0.8 507,055 - EX28DRAFT_3208 0.68 -0.2 507,138 + EX28DRAFT_3208 0.77 -0.6 507,138 + EX28DRAFT_3208 0.77 -1.3 507,138 + EX28DRAFT_3208 0.77 -1.3 507,138 + EX28DRAFT_3208 0.77 +0.8 507,138 + EX28DRAFT_3208 0.77 +0.7 507,138 + EX28DRAFT_3208 0.77 +0.3 507,138 + EX28DRAFT_3208 0.77 -0.3 507,138 + EX28DRAFT_3208 0.77 +0.7 507,139 - EX28DRAFT_3208 0.78 +0.2 507,139 - EX28DRAFT_3208 0.78 -0.2 507,139 - EX28DRAFT_3208 0.78 -0.3 507,380 + -2.6 507,384 - -1.1 507,413 + +0.9 507,413 + +0.4 507,566 + EX28DRAFT_3209 0.15 -0.9 507,566 + EX28DRAFT_3209 0.15 -0.7 507,567 - EX28DRAFT_3209 0.15 +0.1 507,567 - EX28DRAFT_3209 0.15 -1.4 507,623 + EX28DRAFT_3209 0.21 -0.4 507,624 - EX28DRAFT_3209 0.21 -0.8 507,624 - EX28DRAFT_3209 0.21 +1.4 507,624 - EX28DRAFT_3209 0.21 -3.1 507,736 + EX28DRAFT_3209 0.32 -2.8 508,083 - EX28DRAFT_3209 0.66 -0.5 508,131 - EX28DRAFT_3209 0.71 -0.8 508,233 + EX28DRAFT_3209 0.81 +0.8 508,334 + -1.0 508,334 + -1.9 508,334 + -1.7
Or see this region's nucleotide sequence