Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3155 and EX28DRAFT_3156 are separated by 56 nucleotides EX28DRAFT_3156 and EX28DRAFT_3157 are separated by 80 nucleotides EX28DRAFT_3157 and EX28DRAFT_3158 are separated by 271 nucleotides
EX28DRAFT_3155: EX28DRAFT_3155 - Predicted dehydrogenases and related proteins, at 457,428 to 458,426
_3155
EX28DRAFT_3156: EX28DRAFT_3156 - RNA, at 458,483 to 458,596
_3156
EX28DRAFT_3157: EX28DRAFT_3157 - integral membrane protein, TerC family, at 458,677 to 459,645
_3157
EX28DRAFT_3158: EX28DRAFT_3158 - Na+/serine symporter, at 459,917 to 461,158
_3158
Position (kb) 458
459
460 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 457.931 kb on + strand, within EX28DRAFT_3155 at 457.955 kb on + strand, within EX28DRAFT_3155 at 457.956 kb on - strand, within EX28DRAFT_3155 at 457.956 kb on - strand, within EX28DRAFT_3155 at 457.958 kb on + strand, within EX28DRAFT_3155 at 457.959 kb on - strand, within EX28DRAFT_3155 at 458.252 kb on + strand, within EX28DRAFT_3155 at 458.253 kb on - strand, within EX28DRAFT_3155 at 458.256 kb on - strand, within EX28DRAFT_3155 at 458.261 kb on + strand, within EX28DRAFT_3155 at 458.261 kb on + strand, within EX28DRAFT_3155 at 458.261 kb on + strand, within EX28DRAFT_3155 at 458.261 kb on + strand, within EX28DRAFT_3155 at 458.261 kb on + strand, within EX28DRAFT_3155 at 458.262 kb on - strand, within EX28DRAFT_3155 at 458.268 kb on + strand, within EX28DRAFT_3155 at 458.268 kb on + strand, within EX28DRAFT_3155 at 458.477 kb on + strand at 458.478 kb on - strand at 458.485 kb on + strand at 458.502 kb on - strand, within EX28DRAFT_3156 at 458.527 kb on + strand, within EX28DRAFT_3156 at 458.527 kb on + strand, within EX28DRAFT_3156 at 458.575 kb on + strand, within EX28DRAFT_3156 at 458.575 kb on + strand, within EX28DRAFT_3156 at 458.576 kb on - strand, within EX28DRAFT_3156 at 458.604 kb on + strand at 458.604 kb on + strand at 458.604 kb on + strand at 458.604 kb on + strand at 458.605 kb on - strand at 458.605 kb on - strand at 458.605 kb on - strand at 458.610 kb on + strand at 458.611 kb on - strand at 458.658 kb on + strand at 458.658 kb on + strand at 458.659 kb on - strand at 458.673 kb on + strand at 458.673 kb on + strand at 458.676 kb on + strand at 458.860 kb on + strand, within EX28DRAFT_3157 at 458.860 kb on + strand, within EX28DRAFT_3157 at 459.026 kb on - strand, within EX28DRAFT_3157 at 459.533 kb on - strand, within EX28DRAFT_3157 at 459.591 kb on - strand at 459.643 kb on + strand at 459.713 kb on - strand at 459.796 kb on + strand at 459.846 kb on - strand at 459.849 kb on + strand at 459.912 kb on + strand at 459.912 kb on + strand at 459.912 kb on + strand at 459.913 kb on - strand at 459.913 kb on - strand at 459.913 kb on - strand at 459.916 kb on + strand at 459.916 kb on + strand at 459.916 kb on + strand at 460.176 kb on - strand, within EX28DRAFT_3158 at 460.220 kb on - strand, within EX28DRAFT_3158 at 460.358 kb on + strand, within EX28DRAFT_3158 at 460.359 kb on - strand, within EX28DRAFT_3158 at 460.359 kb on - strand, within EX28DRAFT_3158 at 460.359 kb on - strand, within EX28DRAFT_3158 at 460.463 kb on - strand, within EX28DRAFT_3158 at 460.588 kb on + strand, within EX28DRAFT_3158 at 460.589 kb on - strand, within EX28DRAFT_3158 at 460.589 kb on - strand, within EX28DRAFT_3158
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 457,931 + EX28DRAFT_3155 0.50 +0.0 457,955 + EX28DRAFT_3155 0.53 -1.0 457,956 - EX28DRAFT_3155 0.53 -0.4 457,956 - EX28DRAFT_3155 0.53 +5.2 457,958 + EX28DRAFT_3155 0.53 +2.8 457,959 - EX28DRAFT_3155 0.53 +1.5 458,252 + EX28DRAFT_3155 0.82 -0.2 458,253 - EX28DRAFT_3155 0.83 +2.2 458,256 - EX28DRAFT_3155 0.83 -1.9 458,261 + EX28DRAFT_3155 0.83 -3.0 458,261 + EX28DRAFT_3155 0.83 -0.5 458,261 + EX28DRAFT_3155 0.83 +0.6 458,261 + EX28DRAFT_3155 0.83 +0.5 458,261 + EX28DRAFT_3155 0.83 +0.7 458,262 - EX28DRAFT_3155 0.83 +0.4 458,268 + EX28DRAFT_3155 0.84 -0.9 458,268 + EX28DRAFT_3155 0.84 +0.4 458,477 + +0.6 458,478 - +0.7 458,485 + -0.6 458,502 - EX28DRAFT_3156 0.17 -1.4 458,527 + EX28DRAFT_3156 0.39 +0.7 458,527 + EX28DRAFT_3156 0.39 -0.1 458,575 + EX28DRAFT_3156 0.81 +0.1 458,575 + EX28DRAFT_3156 0.81 -1.1 458,576 - EX28DRAFT_3156 0.82 -0.2 458,604 + +0.2 458,604 + +0.3 458,604 + +0.3 458,604 + +1.2 458,605 - +0.3 458,605 - -0.0 458,605 - +0.2 458,610 + -1.3 458,611 - +0.2 458,658 + -2.1 458,658 + -1.2 458,659 - +0.3 458,673 + +0.4 458,673 + +0.3 458,676 + -0.4 458,860 + EX28DRAFT_3157 0.19 -0.0 458,860 + EX28DRAFT_3157 0.19 +0.6 459,026 - EX28DRAFT_3157 0.36 -1.3 459,533 - EX28DRAFT_3157 0.88 -2.1 459,591 - -1.6 459,643 + -0.6 459,713 - -1.0 459,796 + +1.2 459,846 - +0.9 459,849 + -1.2 459,912 + +0.3 459,912 + +1.3 459,912 + -0.0 459,913 - +1.0 459,913 - +0.6 459,913 - -0.9 459,916 + -1.0 459,916 + -1.3 459,916 + +1.2 460,176 - EX28DRAFT_3158 0.21 -0.7 460,220 - EX28DRAFT_3158 0.24 +1.6 460,358 + EX28DRAFT_3158 0.36 -2.5 460,359 - EX28DRAFT_3158 0.36 -0.7 460,359 - EX28DRAFT_3158 0.36 -1.8 460,359 - EX28DRAFT_3158 0.36 +0.1 460,463 - EX28DRAFT_3158 0.44 +1.5 460,588 + EX28DRAFT_3158 0.54 +3.2 460,589 - EX28DRAFT_3158 0.54 +0.8 460,589 - EX28DRAFT_3158 0.54 -1.2
Or see this region's nucleotide sequence