Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3140 and EX28DRAFT_3141 are separated by 38 nucleotides EX28DRAFT_3141 and EX28DRAFT_3142 are separated by 42 nucleotides EX28DRAFT_3142 and EX28DRAFT_3143 are separated by 12 nucleotides EX28DRAFT_3143 and EX28DRAFT_3144 are separated by 55 nucleotides
EX28DRAFT_3140: EX28DRAFT_3140 - diamine aminotransferase apoenzyme (EC 2.6.1.29), at 441,135 to 442,541
_3140
EX28DRAFT_3141: EX28DRAFT_3141 - transcriptional regulator, XRE family with cupin sensor, at 442,580 to 443,182
_3141
EX28DRAFT_3142: EX28DRAFT_3142 - Uncharacterized conserved protein, at 443,225 to 443,911
_3142
EX28DRAFT_3143: EX28DRAFT_3143 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 443,924 to 444,772
_3143
EX28DRAFT_3144: EX28DRAFT_3144 - Uncharacterized conserved protein, at 444,828 to 445,121
_3144
Position (kb) 443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 442.279 kb on + strand, within EX28DRAFT_3140 at 442.367 kb on + strand, within EX28DRAFT_3140 at 442.367 kb on + strand, within EX28DRAFT_3140 at 442.522 kb on + strand at 442.522 kb on + strand at 442.523 kb on - strand at 442.610 kb on - strand at 442.722 kb on - strand, within EX28DRAFT_3141 at 442.814 kb on + strand, within EX28DRAFT_3141 at 442.815 kb on - strand, within EX28DRAFT_3141 at 443.042 kb on - strand, within EX28DRAFT_3141 at 443.042 kb on - strand, within EX28DRAFT_3141 at 443.224 kb on + strand at 443.224 kb on + strand at 443.224 kb on + strand at 443.225 kb on - strand at 443.225 kb on - strand at 443.225 kb on - strand at 443.247 kb on + strand at 443.247 kb on + strand at 443.247 kb on + strand at 443.530 kb on + strand, within EX28DRAFT_3142 at 443.530 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.534 kb on + strand, within EX28DRAFT_3142 at 443.535 kb on - strand, within EX28DRAFT_3142 at 443.535 kb on - strand, within EX28DRAFT_3142 at 443.535 kb on - strand, within EX28DRAFT_3142 at 443.535 kb on - strand, within EX28DRAFT_3142 at 443.535 kb on - strand, within EX28DRAFT_3142 at 443.641 kb on + strand, within EX28DRAFT_3142 at 443.693 kb on - strand, within EX28DRAFT_3142 at 443.779 kb on + strand, within EX28DRAFT_3142 at 443.779 kb on + strand, within EX28DRAFT_3142 at 443.780 kb on - strand, within EX28DRAFT_3142 at 443.789 kb on - strand, within EX28DRAFT_3142 at 443.909 kb on + strand at 443.909 kb on + strand at 444.062 kb on + strand, within EX28DRAFT_3143 at 444.063 kb on - strand, within EX28DRAFT_3143 at 444.068 kb on + strand, within EX28DRAFT_3143 at 444.315 kb on - strand, within EX28DRAFT_3143 at 444.315 kb on - strand, within EX28DRAFT_3143 at 444.360 kb on + strand, within EX28DRAFT_3143 at 444.385 kb on + strand, within EX28DRAFT_3143 at 444.385 kb on + strand, within EX28DRAFT_3143 at 444.387 kb on + strand, within EX28DRAFT_3143 at 444.388 kb on - strand, within EX28DRAFT_3143 at 444.630 kb on - strand, within EX28DRAFT_3143 at 444.635 kb on - strand, within EX28DRAFT_3143 at 444.743 kb on - strand at 444.817 kb on + strand at 444.818 kb on - strand at 444.818 kb on - strand at 444.818 kb on - strand at 444.819 kb on + strand at 444.863 kb on + strand, within EX28DRAFT_3144 at 444.863 kb on + strand, within EX28DRAFT_3144 at 444.863 kb on + strand, within EX28DRAFT_3144 at 444.864 kb on - strand, within EX28DRAFT_3144 at 444.910 kb on + strand, within EX28DRAFT_3144 at 444.911 kb on - strand, within EX28DRAFT_3144
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 442,279 + EX28DRAFT_3140 0.81 +0.2 442,367 + EX28DRAFT_3140 0.88 +4.0 442,367 + EX28DRAFT_3140 0.88 -0.9 442,522 + -0.0 442,522 + +1.0 442,523 - -0.7 442,610 - -0.1 442,722 - EX28DRAFT_3141 0.24 +1.7 442,814 + EX28DRAFT_3141 0.39 -0.0 442,815 - EX28DRAFT_3141 0.39 +0.2 443,042 - EX28DRAFT_3141 0.77 +0.7 443,042 - EX28DRAFT_3141 0.77 -0.6 443,224 + -0.9 443,224 + +0.7 443,224 + -0.3 443,225 - +0.5 443,225 - +0.4 443,225 - -0.8 443,247 + +1.4 443,247 + +0.2 443,247 + -1.3 443,530 + EX28DRAFT_3142 0.44 +0.0 443,530 + EX28DRAFT_3142 0.44 -0.6 443,534 + EX28DRAFT_3142 0.45 -2.5 443,534 + EX28DRAFT_3142 0.45 -0.2 443,534 + EX28DRAFT_3142 0.45 -3.1 443,534 + EX28DRAFT_3142 0.45 -2.1 443,534 + EX28DRAFT_3142 0.45 -0.3 443,534 + EX28DRAFT_3142 0.45 -1.9 443,534 + EX28DRAFT_3142 0.45 +0.0 443,534 + EX28DRAFT_3142 0.45 +1.1 443,535 - EX28DRAFT_3142 0.45 -0.1 443,535 - EX28DRAFT_3142 0.45 +0.6 443,535 - EX28DRAFT_3142 0.45 -1.9 443,535 - EX28DRAFT_3142 0.45 +1.3 443,535 - EX28DRAFT_3142 0.45 -0.8 443,641 + EX28DRAFT_3142 0.61 +0.5 443,693 - EX28DRAFT_3142 0.68 +1.1 443,779 + EX28DRAFT_3142 0.81 +0.1 443,779 + EX28DRAFT_3142 0.81 -1.3 443,780 - EX28DRAFT_3142 0.81 +0.6 443,789 - EX28DRAFT_3142 0.82 -0.6 443,909 + -0.3 443,909 + +0.4 444,062 + EX28DRAFT_3143 0.16 -0.4 444,063 - EX28DRAFT_3143 0.16 +1.4 444,068 + EX28DRAFT_3143 0.17 +1.6 444,315 - EX28DRAFT_3143 0.46 -0.6 444,315 - EX28DRAFT_3143 0.46 +0.4 444,360 + EX28DRAFT_3143 0.51 +1.6 444,385 + EX28DRAFT_3143 0.54 -1.3 444,385 + EX28DRAFT_3143 0.54 -0.2 444,387 + EX28DRAFT_3143 0.55 -1.8 444,388 - EX28DRAFT_3143 0.55 +0.2 444,630 - EX28DRAFT_3143 0.83 -1.5 444,635 - EX28DRAFT_3143 0.84 +1.6 444,743 - +0.9 444,817 + +0.1 444,818 - -1.1 444,818 - +1.1 444,818 - +0.5 444,819 + +0.3 444,863 + EX28DRAFT_3144 0.12 -2.4 444,863 + EX28DRAFT_3144 0.12 -0.5 444,863 + EX28DRAFT_3144 0.12 -1.0 444,864 - EX28DRAFT_3144 0.12 -0.0 444,910 + EX28DRAFT_3144 0.28 +0.5 444,911 - EX28DRAFT_3144 0.28 +1.5
Or see this region's nucleotide sequence