Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3097 and EX28DRAFT_3098 are separated by 9 nucleotides EX28DRAFT_3098 and EX28DRAFT_3099 are separated by 44 nucleotides EX28DRAFT_3099 and EX28DRAFT_3100 are separated by 236 nucleotides EX28DRAFT_3100 and EX28DRAFT_3101 are separated by 115 nucleotides
EX28DRAFT_3097: EX28DRAFT_3097 - Urease accessory protein UreF, at 407,195 to 407,869
_3097
EX28DRAFT_3098: EX28DRAFT_3098 - urease accessory protein UreG, at 407,879 to 408,496
_3098
EX28DRAFT_3099: EX28DRAFT_3099 - tRNA threonylcarbamoyl adenosine modification protein TsaD, at 408,541 to 409,554
_3099
EX28DRAFT_3100: EX28DRAFT_3100 - ribosomal protein S21, at 409,791 to 410,006
_3100
EX28DRAFT_3101: EX28DRAFT_3101 - DNA primase, catalytic core, at 410,122 to 411,867
_3101
Position (kb) 408
409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 407.569 kb on + strand, within EX28DRAFT_3097 at 407.570 kb on - strand, within EX28DRAFT_3097 at 407.570 kb on - strand, within EX28DRAFT_3097 at 407.570 kb on - strand, within EX28DRAFT_3097 at 407.653 kb on + strand, within EX28DRAFT_3097 at 407.654 kb on - strand, within EX28DRAFT_3097 at 407.654 kb on - strand, within EX28DRAFT_3097 at 407.981 kb on + strand, within EX28DRAFT_3098 at 407.981 kb on + strand, within EX28DRAFT_3098 at 407.981 kb on + strand, within EX28DRAFT_3098 at 407.981 kb on + strand, within EX28DRAFT_3098 at 407.982 kb on - strand, within EX28DRAFT_3098 at 407.982 kb on - strand, within EX28DRAFT_3098 at 408.011 kb on + strand, within EX28DRAFT_3098 at 408.011 kb on + strand, within EX28DRAFT_3098 at 408.011 kb on + strand, within EX28DRAFT_3098 at 408.012 kb on - strand, within EX28DRAFT_3098 at 408.012 kb on - strand, within EX28DRAFT_3098 at 408.012 kb on - strand, within EX28DRAFT_3098 at 408.248 kb on + strand, within EX28DRAFT_3098 at 408.248 kb on + strand, within EX28DRAFT_3098 at 408.249 kb on - strand, within EX28DRAFT_3098 at 408.332 kb on - strand, within EX28DRAFT_3098 at 408.542 kb on + strand at 408.543 kb on - strand at 409.611 kb on - strand at 409.644 kb on + strand at 409.645 kb on - strand at 409.647 kb on - strand at 410.095 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 407,569 + EX28DRAFT_3097 0.55 +0.7 407,570 - EX28DRAFT_3097 0.56 +0.1 407,570 - EX28DRAFT_3097 0.56 -0.5 407,570 - EX28DRAFT_3097 0.56 +0.6 407,653 + EX28DRAFT_3097 0.68 +1.1 407,654 - EX28DRAFT_3097 0.68 -1.6 407,654 - EX28DRAFT_3097 0.68 -1.3 407,981 + EX28DRAFT_3098 0.17 +0.1 407,981 + EX28DRAFT_3098 0.17 -0.3 407,981 + EX28DRAFT_3098 0.17 +0.1 407,981 + EX28DRAFT_3098 0.17 +1.9 407,982 - EX28DRAFT_3098 0.17 -0.3 407,982 - EX28DRAFT_3098 0.17 -0.2 408,011 + EX28DRAFT_3098 0.21 +0.2 408,011 + EX28DRAFT_3098 0.21 +0.0 408,011 + EX28DRAFT_3098 0.21 -1.6 408,012 - EX28DRAFT_3098 0.22 -2.0 408,012 - EX28DRAFT_3098 0.22 -0.1 408,012 - EX28DRAFT_3098 0.22 -3.0 408,248 + EX28DRAFT_3098 0.60 -1.2 408,248 + EX28DRAFT_3098 0.60 +0.3 408,249 - EX28DRAFT_3098 0.60 +0.2 408,332 - EX28DRAFT_3098 0.73 +0.3 408,542 + -0.4 408,543 - -3.3 409,611 - -0.2 409,644 + +0.7 409,645 - +0.1 409,647 - -1.8 410,095 + +0.8
Or see this region's nucleotide sequence