Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3078 and EX28DRAFT_3079 are separated by 376 nucleotides EX28DRAFT_3079 and EX28DRAFT_3080 are separated by 76 nucleotides EX28DRAFT_3080 and EX28DRAFT_3081 are separated by 40 nucleotides
EX28DRAFT_3078: EX28DRAFT_3078 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 388,452 to 389,105
_3078
EX28DRAFT_3079: EX28DRAFT_3079 - Uncharacterized protein conserved in bacteria, at 389,482 to 389,778
_3079
EX28DRAFT_3080: EX28DRAFT_3080 - rfaE bifunctional protein, domain I/rfaE bifunctional protein, domain II, at 389,855 to 391,285
_3080
EX28DRAFT_3081: EX28DRAFT_3081 - Glutamine synthetase adenylyltransferase, at 391,326 to 394,181
_3081
Position (kb) 389
390
391
392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 389.129 kb on - strand at 389.372 kb on - strand at 389.372 kb on - strand at 389.372 kb on - strand at 389.372 kb on - strand at 389.402 kb on + strand at 389.403 kb on - strand at 389.403 kb on - strand at 389.455 kb on - strand at 389.532 kb on + strand, within EX28DRAFT_3079 at 389.776 kb on + strand at 391.341 kb on + strand at 391.673 kb on + strand, within EX28DRAFT_3081 at 391.805 kb on - strand, within EX28DRAFT_3081 at 392.043 kb on + strand, within EX28DRAFT_3081 at 392.043 kb on + strand, within EX28DRAFT_3081 at 392.073 kb on + strand, within EX28DRAFT_3081 at 392.073 kb on + strand, within EX28DRAFT_3081 at 392.074 kb on - strand, within EX28DRAFT_3081 at 392.090 kb on + strand, within EX28DRAFT_3081 at 392.090 kb on + strand, within EX28DRAFT_3081 at 392.090 kb on + strand, within EX28DRAFT_3081 at 392.211 kb on + strand, within EX28DRAFT_3081 at 392.211 kb on + strand, within EX28DRAFT_3081 at 392.211 kb on + strand, within EX28DRAFT_3081 at 392.248 kb on - strand, within EX28DRAFT_3081
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 389,129 - -0.3 389,372 - +1.3 389,372 - -2.6 389,372 - -1.6 389,372 - -0.7 389,402 + -1.8 389,403 - +0.5 389,403 - +0.3 389,455 - +0.5 389,532 + EX28DRAFT_3079 0.17 -2.4 389,776 + -2.4 391,341 + -0.4 391,673 + EX28DRAFT_3081 0.12 -0.2 391,805 - EX28DRAFT_3081 0.17 -0.2 392,043 + EX28DRAFT_3081 0.25 +0.4 392,043 + EX28DRAFT_3081 0.25 -1.6 392,073 + EX28DRAFT_3081 0.26 -0.0 392,073 + EX28DRAFT_3081 0.26 -0.0 392,074 - EX28DRAFT_3081 0.26 -3.0 392,090 + EX28DRAFT_3081 0.27 +0.2 392,090 + EX28DRAFT_3081 0.27 -0.1 392,090 + EX28DRAFT_3081 0.27 +0.0 392,211 + EX28DRAFT_3081 0.31 +2.5 392,211 + EX28DRAFT_3081 0.31 -3.2 392,211 + EX28DRAFT_3081 0.31 +0.2 392,248 - EX28DRAFT_3081 0.32 -0.2
Or see this region's nucleotide sequence