Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2970 and EX28DRAFT_2971 are separated by 186 nucleotides EX28DRAFT_2971 and EX28DRAFT_2972 are separated by 92 nucleotides
EX28DRAFT_2970: EX28DRAFT_2970 - Small-conductance mechanosensitive channel, at 279,448 to 280,302
_2970
EX28DRAFT_2971: EX28DRAFT_2971 - fructose-bisphosphate aldolase (EC 4.1.2.13), at 280,489 to 281,568
_2971
EX28DRAFT_2972: EX28DRAFT_2972 - phosphoglycerate kinase (EC 2.7.2.3), at 281,661 to 282,824
_2972
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1 at 279.722 kb on + strand, within EX28DRAFT_2970 at 279.900 kb on - strand, within EX28DRAFT_2970 at 279.900 kb on - strand, within EX28DRAFT_2970 at 280.062 kb on + strand, within EX28DRAFT_2970 at 280.063 kb on - strand, within EX28DRAFT_2970 at 280.156 kb on - strand, within EX28DRAFT_2970 at 280.160 kb on - strand, within EX28DRAFT_2970 at 280.282 kb on + strand at 280.282 kb on + strand at 280.283 kb on - strand at 280.304 kb on + strand at 280.389 kb on + strand at 280.490 kb on + strand at 281.663 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 279,722 + EX28DRAFT_2970 0.32 +0.6 279,900 - EX28DRAFT_2970 0.53 -0.9 279,900 - EX28DRAFT_2970 0.53 +0.3 280,062 + EX28DRAFT_2970 0.72 +0.9 280,063 - EX28DRAFT_2970 0.72 -0.5 280,156 - EX28DRAFT_2970 0.83 +0.6 280,160 - EX28DRAFT_2970 0.83 +0.1 280,282 + -2.6 280,282 + +0.6 280,283 - +0.1 280,304 + -0.1 280,389 + +1.3 280,490 + -1.5 281,663 - +0.8
Or see this region's nucleotide sequence