Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2860 and EX28DRAFT_2861 are separated by 53 nucleotides EX28DRAFT_2861 and EX28DRAFT_2862 are separated by 82 nucleotides
EX28DRAFT_2860: EX28DRAFT_2860 - Male sterility protein, at 161,571 to 162,680
_2860
EX28DRAFT_2861: EX28DRAFT_2861 - phosphopyruvate hydratase, at 162,734 to 164,032
_2861
EX28DRAFT_2862: EX28DRAFT_2862 - CTP synthase (EC 6.3.4.2), at 164,115 to 165,752
_2862
Position (kb) 162
163
164
165 Strain fitness (log2 ratio) -1
0
1
2 at 161.768 kb on + strand, within EX28DRAFT_2860 at 161.769 kb on - strand, within EX28DRAFT_2860 at 161.772 kb on - strand, within EX28DRAFT_2860 at 161.846 kb on + strand, within EX28DRAFT_2860 at 161.847 kb on - strand, within EX28DRAFT_2860 at 162.058 kb on - strand, within EX28DRAFT_2860 at 162.225 kb on - strand, within EX28DRAFT_2860 at 162.267 kb on + strand, within EX28DRAFT_2860 at 162.287 kb on - strand, within EX28DRAFT_2860 at 162.420 kb on + strand, within EX28DRAFT_2860 at 162.421 kb on - strand, within EX28DRAFT_2860 at 162.421 kb on - strand, within EX28DRAFT_2860 at 162.421 kb on - strand, within EX28DRAFT_2860 at 162.435 kb on + strand, within EX28DRAFT_2860 at 162.521 kb on - strand, within EX28DRAFT_2860 at 162.522 kb on + strand, within EX28DRAFT_2860 at 162.542 kb on + strand, within EX28DRAFT_2860 at 162.563 kb on + strand, within EX28DRAFT_2860 at 162.675 kb on - strand at 162.728 kb on - strand at 162.735 kb on + strand at 162.768 kb on + strand at 164.055 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 161,768 + EX28DRAFT_2860 0.18 +0.0 161,769 - EX28DRAFT_2860 0.18 +0.3 161,772 - EX28DRAFT_2860 0.18 -0.2 161,846 + EX28DRAFT_2860 0.25 +0.8 161,847 - EX28DRAFT_2860 0.25 +0.7 162,058 - EX28DRAFT_2860 0.44 -0.9 162,225 - EX28DRAFT_2860 0.59 +0.1 162,267 + EX28DRAFT_2860 0.63 -0.0 162,287 - EX28DRAFT_2860 0.65 -0.3 162,420 + EX28DRAFT_2860 0.76 +2.1 162,421 - EX28DRAFT_2860 0.77 +0.1 162,421 - EX28DRAFT_2860 0.77 +0.3 162,421 - EX28DRAFT_2860 0.77 +0.5 162,435 + EX28DRAFT_2860 0.78 +1.0 162,521 - EX28DRAFT_2860 0.86 -0.5 162,522 + EX28DRAFT_2860 0.86 +1.8 162,542 + EX28DRAFT_2860 0.87 -1.1 162,563 + EX28DRAFT_2860 0.89 -0.3 162,675 - -1.0 162,728 - +0.3 162,735 + -0.6 162,768 + -0.5 164,055 - -1.5
Or see this region's nucleotide sequence