Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2841 and EX28DRAFT_2842 overlap by 4 nucleotides EX28DRAFT_2842 and EX28DRAFT_2843 overlap by 1 nucleotides EX28DRAFT_2843 and EX28DRAFT_2844 are separated by 19 nucleotides
EX28DRAFT_2841: EX28DRAFT_2841 - tRNA pseudouridine synthase, TruD family, at 143,422 to 144,471
_2841
EX28DRAFT_2842: EX28DRAFT_2842 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12), at 144,468 to 144,947
_2842
EX28DRAFT_2843: EX28DRAFT_2843 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 144,947 to 145,657
_2843
EX28DRAFT_2844: EX28DRAFT_2844 - Septum formation initiator, at 145,677 to 145,988
_2844
Position (kb) 144
145 Strain fitness (log2 ratio) -1
0
1 at 143.491 kb on - strand at 143.549 kb on - strand, within EX28DRAFT_2841 at 143.549 kb on - strand, within EX28DRAFT_2841 at 143.791 kb on + strand, within EX28DRAFT_2841 at 143.997 kb on - strand, within EX28DRAFT_2841 at 144.184 kb on - strand, within EX28DRAFT_2841 at 144.232 kb on - strand, within EX28DRAFT_2841 at 144.330 kb on + strand, within EX28DRAFT_2841 at 144.342 kb on + strand, within EX28DRAFT_2841 at 144.436 kb on - strand at 144.447 kb on - strand at 144.447 kb on - strand at 145.635 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 143,491 - +0.1 143,549 - EX28DRAFT_2841 0.12 +0.7 143,549 - EX28DRAFT_2841 0.12 -0.7 143,791 + EX28DRAFT_2841 0.35 -0.7 143,997 - EX28DRAFT_2841 0.55 +0.8 144,184 - EX28DRAFT_2841 0.73 -0.4 144,232 - EX28DRAFT_2841 0.77 -0.3 144,330 + EX28DRAFT_2841 0.86 -0.2 144,342 + EX28DRAFT_2841 0.88 +0.0 144,436 - +1.1 144,447 - -0.1 144,447 - -0.5 145,635 - +0.1
Or see this region's nucleotide sequence