Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2831 and EX28DRAFT_2832 overlap by 11 nucleotides EX28DRAFT_2832 and EX28DRAFT_2833 are separated by 171 nucleotides EX28DRAFT_2833 and EX28DRAFT_2834 overlap by 4 nucleotides EX28DRAFT_2834 and EX28DRAFT_2835 are separated by 105 nucleotides
EX28DRAFT_2831: EX28DRAFT_2831 - UbiD family decarboxylase, at 134,547 to 135,974
_2831
EX28DRAFT_2832: EX28DRAFT_2832 - polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases, at 135,964 to 136,566
_2832
EX28DRAFT_2833: EX28DRAFT_2833 - Transcriptional regulators, at 136,738 to 137,145
_2833
EX28DRAFT_2834: EX28DRAFT_2834 - Transcriptional regulator, at 137,142 to 138,032
_2834
EX28DRAFT_2835: EX28DRAFT_2835 - Arabinose efflux permease, at 138,138 to 139,340
_2835
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 135.978 kb on + strand at 135.978 kb on + strand at 135.979 kb on - strand at 135.979 kb on - strand at 136.112 kb on + strand, within EX28DRAFT_2832 at 136.113 kb on - strand, within EX28DRAFT_2832 at 136.113 kb on - strand, within EX28DRAFT_2832 at 136.115 kb on + strand, within EX28DRAFT_2832 at 136.116 kb on - strand, within EX28DRAFT_2832 at 136.356 kb on + strand, within EX28DRAFT_2832 at 136.556 kb on - strand at 136.607 kb on + strand at 136.607 kb on + strand at 136.607 kb on + strand at 136.608 kb on - strand at 136.608 kb on - strand at 136.608 kb on - strand at 136.612 kb on + strand at 136.908 kb on + strand, within EX28DRAFT_2833 at 137.144 kb on - strand at 137.144 kb on - strand at 137.144 kb on - strand at 137.144 kb on - strand at 137.221 kb on + strand at 137.221 kb on + strand at 137.243 kb on + strand, within EX28DRAFT_2834 at 137.244 kb on - strand, within EX28DRAFT_2834 at 137.245 kb on + strand, within EX28DRAFT_2834 at 137.245 kb on + strand, within EX28DRAFT_2834 at 137.245 kb on + strand, within EX28DRAFT_2834 at 137.246 kb on - strand, within EX28DRAFT_2834 at 137.463 kb on - strand, within EX28DRAFT_2834 at 137.628 kb on - strand, within EX28DRAFT_2834 at 137.628 kb on - strand, within EX28DRAFT_2834 at 137.725 kb on + strand, within EX28DRAFT_2834 at 137.911 kb on - strand, within EX28DRAFT_2834 at 137.922 kb on - strand, within EX28DRAFT_2834 at 138.024 kb on - strand at 138.107 kb on + strand at 138.108 kb on - strand at 138.112 kb on + strand at 138.144 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 135,978 + -0.5 135,978 + -1.1 135,979 - -1.8 135,979 - +2.1 136,112 + EX28DRAFT_2832 0.25 -0.2 136,113 - EX28DRAFT_2832 0.25 +0.4 136,113 - EX28DRAFT_2832 0.25 -0.6 136,115 + EX28DRAFT_2832 0.25 -2.0 136,116 - EX28DRAFT_2832 0.25 -0.5 136,356 + EX28DRAFT_2832 0.65 -1.2 136,556 - -0.4 136,607 + +1.7 136,607 + +0.6 136,607 + -1.6 136,608 - -0.1 136,608 - +0.0 136,608 - -0.4 136,612 + -0.6 136,908 + EX28DRAFT_2833 0.42 -3.1 137,144 - +0.2 137,144 - +1.3 137,144 - +1.0 137,144 - -0.8 137,221 + -1.4 137,221 + +2.1 137,243 + EX28DRAFT_2834 0.11 -0.9 137,244 - EX28DRAFT_2834 0.11 -0.8 137,245 + EX28DRAFT_2834 0.12 +0.1 137,245 + EX28DRAFT_2834 0.12 -1.2 137,245 + EX28DRAFT_2834 0.12 -0.8 137,246 - EX28DRAFT_2834 0.12 +0.2 137,463 - EX28DRAFT_2834 0.36 -2.4 137,628 - EX28DRAFT_2834 0.55 -0.4 137,628 - EX28DRAFT_2834 0.55 +0.4 137,725 + EX28DRAFT_2834 0.65 +0.7 137,911 - EX28DRAFT_2834 0.86 -0.1 137,922 - EX28DRAFT_2834 0.88 -0.1 138,024 - -1.4 138,107 + +0.0 138,108 - +0.2 138,112 + -1.5 138,144 + -0.6
Or see this region's nucleotide sequence