Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2427

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
2,451,929	-		EX28DRAFT_2426	0.16	+2.5
2,451,971	+		EX28DRAFT_2426	0.23	-0.3
2,451,972	-		EX28DRAFT_2426	0.23	+1.1
2,452,024	+		EX28DRAFT_2426	0.31	+0.5
2,452,025	-		EX28DRAFT_2426	0.31	-1.5
2,452,025	-		EX28DRAFT_2426	0.31	+1.7
2,452,025	-		EX28DRAFT_2426	0.31	-0.9
2,452,025	-		EX28DRAFT_2426	0.31	+0.1
2,452,025	-		EX28DRAFT_2426	0.31	+0.1
2,452,190	-		EX28DRAFT_2426	0.56	-1.6
2,452,190	-		EX28DRAFT_2426	0.56	+0.7
2,452,190	-		EX28DRAFT_2426	0.56	-0.2
2,452,522	+				-0.7
2,452,522	+				+0.2
2,452,523	-				-0.9
2,452,523	-				+0.7
2,452,523	-				-2.3
2,452,524	+				+0.4
2,452,539	+				-1.0
2,452,540	-				+0.2
2,452,540	-				-0.2
2,452,623	+				+0.3
2,452,624	-				+0.5
2,452,749	+				+0.3
2,452,818	-				-0.8
2,452,875	-				-0.3
2,452,875	-				-1.2
2,452,879	-				-0.3
2,452,881	-				+0.9
2,452,881	-				-1.3
2,452,913	+				+0.3
2,452,914	-				+0.9
2,452,928	-				+0.2
2,453,201	+		EX28DRAFT_2427	0.12	-0.1
2,453,204	+		EX28DRAFT_2427	0.12	+1.0
2,453,204	+		EX28DRAFT_2427	0.12	-0.1
2,453,205	-		EX28DRAFT_2427	0.12	-1.5
2,453,242	+		EX28DRAFT_2427	0.14	-2.3
2,453,243	-		EX28DRAFT_2427	0.14	-0.6
2,453,394	+		EX28DRAFT_2427	0.19	+0.5
2,453,395	-		EX28DRAFT_2427	0.20	+0.8
2,453,399	+		EX28DRAFT_2427	0.20	+0.6
2,453,433	-		EX28DRAFT_2427	0.21	+0.2
2,453,433	-		EX28DRAFT_2427	0.21	+0.3
2,453,477	+		EX28DRAFT_2427	0.23	+0.1
2,453,484	+		EX28DRAFT_2427	0.23	+2.3
2,453,496	-		EX28DRAFT_2427	0.23	+1.0
2,453,574	-		EX28DRAFT_2427	0.26	+1.4
2,453,574	-		EX28DRAFT_2427	0.26	-3.1
2,453,574	-		EX28DRAFT_2427	0.26	-1.0
2,453,578	-		EX28DRAFT_2427	0.26	-1.2
2,453,578	-		EX28DRAFT_2427	0.26	-1.4
2,453,578	-		EX28DRAFT_2427	0.26	+0.5
2,453,578	-		EX28DRAFT_2427	0.26	-0.9
2,453,598	+		EX28DRAFT_2427	0.27	-0.4
2,453,598	+		EX28DRAFT_2427	0.27	+0.3
2,453,599	-		EX28DRAFT_2427	0.27	-1.6
2,453,663	+		EX28DRAFT_2427	0.30	-2.3
2,453,670	+		EX28DRAFT_2427	0.30	+2.1
2,453,671	-		EX28DRAFT_2427	0.30	+0.0
2,453,671	-		EX28DRAFT_2427	0.30	+0.2
2,453,783	+		EX28DRAFT_2427	0.34	+0.6
2,453,783	+		EX28DRAFT_2427	0.34	-0.4
2,453,805	-		EX28DRAFT_2427	0.35	-1.8
2,453,847	-		EX28DRAFT_2427	0.37	+0.3
2,453,943	-		EX28DRAFT_2427	0.40	-3.5
2,453,982	-		EX28DRAFT_2427	0.42	-1.5
2,454,069	+		EX28DRAFT_2427	0.45	+0.7
2,454,089	+		EX28DRAFT_2427	0.46	+0.6
2,454,089	+		EX28DRAFT_2427	0.46	+0.7
2,454,090	-		EX28DRAFT_2427	0.46	-0.1
2,454,114	-		EX28DRAFT_2427	0.47	+0.7
2,454,225	-		EX28DRAFT_2427	0.51	-1.3
2,454,225	-		EX28DRAFT_2427	0.51	+0.4
2,454,273	-		EX28DRAFT_2427	0.53	+2.0
2,454,404	+		EX28DRAFT_2427	0.58	+0.8
2,454,405	-		EX28DRAFT_2427	0.58	+0.3
2,454,440	+		EX28DRAFT_2427	0.59	-0.1
2,454,441	-		EX28DRAFT_2427	0.59	-1.3
2,454,456	+		EX28DRAFT_2427	0.60	+0.0
2,454,456	+		EX28DRAFT_2427	0.60	+1.0
2,454,457	-		EX28DRAFT_2427	0.60	+0.4
2,454,459	+		EX28DRAFT_2427	0.60	+3.2
2,454,460	-		EX28DRAFT_2427	0.60	+1.3
2,454,460	-		EX28DRAFT_2427	0.60	+0.4
2,454,477	-		EX28DRAFT_2427	0.61	+1.2
2,454,558	-		EX28DRAFT_2427	0.64	+0.4
2,454,566	-		EX28DRAFT_2427	0.64	+0.1
2,454,566	-		EX28DRAFT_2427	0.64	+0.5
2,454,590	+		EX28DRAFT_2427	0.65	-0.2
2,454,594	+		EX28DRAFT_2427	0.65	+2.1
2,454,595	-		EX28DRAFT_2427	0.65	-0.4
2,454,595	-		EX28DRAFT_2427	0.65	-1.5
2,454,818	+		EX28DRAFT_2427	0.74	+0.3
2,454,819	-		EX28DRAFT_2427	0.74	-0.6
2,454,841	-		EX28DRAFT_2427	0.74	-1.6
2,454,948	-		EX28DRAFT_2427	0.78	-1.7
2,454,948	-		EX28DRAFT_2427	0.78	-1.1
2,454,996	-		EX28DRAFT_2427	0.80	+0.1
2,455,023	-		EX28DRAFT_2427	0.81	-1.5
2,455,089	-		EX28DRAFT_2427	0.84	+1.7
2,455,089	-		EX28DRAFT_2427	0.84	+0.1
2,455,148	+		EX28DRAFT_2427	0.86	+0.2
2,455,148	+		EX28DRAFT_2427	0.86	+1.2
2,455,149	-		EX28DRAFT_2427	0.86	-0.8
2,455,172	+		EX28DRAFT_2427	0.87	+3.1
2,455,212	+		EX28DRAFT_2427	0.88	-0.3
2,455,212	+		EX28DRAFT_2427	0.88	+2.9
2,455,224	+		EX28DRAFT_2427	0.89	+0.4
2,455,225	-		EX28DRAFT_2427	0.89	+3.1
2,455,225	-		EX28DRAFT_2427	0.89	+1.0
2,455,230	-		EX28DRAFT_2427	0.89	-0.4
2,455,235	+		EX28DRAFT_2427	0.89	-0.2
2,455,245	-		EX28DRAFT_2427	0.90	-0.6
2,455,326	-				-0.1
2,455,367	+				-0.5
2,455,376	+				-0.8
2,455,376	+				-0.2
2,455,446	+				-0.5
2,455,446	+				+0.3
2,455,447	-				+0.1
2,455,450	-				-0.2
2,455,450	-				-1.0
2,455,473	-				-0.1
2,455,476	+				-1.8
2,455,476	+				+0.2
2,455,476	+				-0.1
2,455,523	-				+0.3
2,455,554	+				+0.5
2,455,554	+				-0.4
2,455,565	+				-1.2
2,455,582	+				-1.2
2,455,598	+				+0.1
2,455,599	-				-0.3
2,455,606	-				-0.0
2,455,616	+				-2.4
2,455,656	+				-1.1
2,455,695	+				-0.3
2,455,696	-				-0.3
2,455,741	+				+0.5
2,455,772	-				+1.7
2,455,811	+		EX28DRAFT_2428	0.12	+0.1
2,455,897	+		EX28DRAFT_2428	0.17	-0.4
2,455,897	+		EX28DRAFT_2428	0.17	+0.6
2,455,929	+		EX28DRAFT_2428	0.19	+0.8
2,455,930	-		EX28DRAFT_2428	0.19	-3.0
2,455,930	-		EX28DRAFT_2428	0.19	-0.5
2,455,930	-		EX28DRAFT_2428	0.19	+1.5
2,455,933	+		EX28DRAFT_2428	0.20	+1.3
2,455,986	+		EX28DRAFT_2428	0.23	+1.3
2,455,987	-		EX28DRAFT_2428	0.23	-3.1
2,456,059	+		EX28DRAFT_2428	0.27	-0.5
2,456,098	+		EX28DRAFT_2428	0.29	-0.5
2,456,133	+		EX28DRAFT_2428	0.32	+0.1
2,456,171	-		EX28DRAFT_2428	0.34	+4.9
2,456,300	+		EX28DRAFT_2428	0.42	-0.7
2,456,300	+		EX28DRAFT_2428	0.42	-2.1
2,456,362	+		EX28DRAFT_2428	0.45	-0.2
2,456,363	-		EX28DRAFT_2428	0.45	-1.9
2,456,363	-		EX28DRAFT_2428	0.45	-0.5
2,456,370	-		EX28DRAFT_2428	0.46	-0.1
2,456,378	+		EX28DRAFT_2428	0.46	+3.1
2,456,422	+		EX28DRAFT_2428	0.49	-0.7
2,456,423	-		EX28DRAFT_2428	0.49	-0.5
2,456,423	-		EX28DRAFT_2428	0.49	+1.1
2,456,423	-		EX28DRAFT_2428	0.49	+0.2
2,456,436	-		EX28DRAFT_2428	0.50	+0.8
2,456,483	+		EX28DRAFT_2428	0.53	-0.7