Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2249

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2245 and EX28DRAFT_2246 are separated by 222 nucleotidesEX28DRAFT_2246 and EX28DRAFT_2247 are separated by 10 nucleotidesEX28DRAFT_2247 and EX28DRAFT_2248 are separated by 41 nucleotidesEX28DRAFT_2248 and EX28DRAFT_2249 are separated by 161 nucleotidesEX28DRAFT_2249 and EX28DRAFT_2250 are separated by 9 nucleotidesEX28DRAFT_2250 and EX28DRAFT_2251 are separated by 35 nucleotides EX28DRAFT_2245: EX28DRAFT_2245 - quinolinate synthetase (EC 2.5.1.72), at 2,268,482 to 2,269,525 _2245 EX28DRAFT_2246: EX28DRAFT_2246 - tRNA, at 2,269,748 to 2,269,823 _2246 EX28DRAFT_2247: EX28DRAFT_2247 - tRNA, at 2,269,834 to 2,269,909 _2247 EX28DRAFT_2248: EX28DRAFT_2248 - tRNA, at 2,269,951 to 2,270,026 _2248 EX28DRAFT_2249: EX28DRAFT_2249 - tol-pal system protein YbgF, at 2,270,188 to 2,270,982 _2249 EX28DRAFT_2250: EX28DRAFT_2250 - peptidoglycan-associated lipoprotein, at 2,270,992 to 2,271,513 _2250 EX28DRAFT_2251: EX28DRAFT_2251 - tol-pal system beta propeller repeat protein TolB, at 2,271,549 to 2,272,841 _2251 Position (kb) 2270 2271Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2269.199 kb on - strand, within EX28DRAFT_2245at 2269.256 kb on - strand, within EX28DRAFT_2245at 2269.333 kb on + strand, within EX28DRAFT_2245at 2269.380 kb on + strand, within EX28DRAFT_2245at 2269.579 kb on - strandat 2269.628 kb on - strandat 2270.128 kb on + strandat 2270.128 kb on + strandat 2270.137 kb on - strandat 2270.255 kb on - strandat 2270.315 kb on - strand, within EX28DRAFT_2249at 2270.315 kb on - strand, within EX28DRAFT_2249at 2270.401 kb on - strand, within EX28DRAFT_2249at 2270.411 kb on + strand, within EX28DRAFT_2249at 2270.411 kb on + strand, within EX28DRAFT_2249at 2270.411 kb on + strand, within EX28DRAFT_2249at 2270.412 kb on - strand, within EX28DRAFT_2249at 2270.412 kb on - strand, within EX28DRAFT_2249at 2270.412 kb on - strand, within EX28DRAFT_2249at 2270.432 kb on + strand, within EX28DRAFT_2249at 2270.450 kb on + strand, within EX28DRAFT_2249at 2270.466 kb on - strand, within EX28DRAFT_2249at 2270.546 kb on + strand, within EX28DRAFT_2249at 2270.573 kb on - strand, within EX28DRAFT_2249at 2270.686 kb on - strand, within EX28DRAFT_2249at 2270.689 kb on + strand, within EX28DRAFT_2249at 2270.689 kb on + strand, within EX28DRAFT_2249at 2270.690 kb on - strand, within EX28DRAFT_2249at 2270.690 kb on - strand, within EX28DRAFT_2249at 2270.816 kb on - strand, within EX28DRAFT_2249at 2270.889 kb on + strand, within EX28DRAFT_2249at 2270.889 kb on + strand, within EX28DRAFT_2249at 2270.973 kb on + strandat 2270.974 kb on - strandat 2270.993 kb on + strandat 2270.993 kb on + strandat 2270.996 kb on + strandat 2271.049 kb on + strand, within EX28DRAFT_2250at 2271.120 kb on - strand, within EX28DRAFT_2250at 2271.544 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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2,269,199 - EX28DRAFT_2245 0.69 +0.0
2,269,256 - EX28DRAFT_2245 0.74 +2.4
2,269,333 + EX28DRAFT_2245 0.82 +1.2
2,269,380 + EX28DRAFT_2245 0.86 +0.9
2,269,579 - +0.3
2,269,628 - -0.4
2,270,128 + -0.4
2,270,128 + +2.3
2,270,137 - +0.0
2,270,255 - -0.0
2,270,315 - EX28DRAFT_2249 0.16 +0.8
2,270,315 - EX28DRAFT_2249 0.16 +0.4
2,270,401 - EX28DRAFT_2249 0.27 +0.0
2,270,411 + EX28DRAFT_2249 0.28 -2.6
2,270,411 + EX28DRAFT_2249 0.28 -0.2
2,270,411 + EX28DRAFT_2249 0.28 +0.3
2,270,412 - EX28DRAFT_2249 0.28 -0.3
2,270,412 - EX28DRAFT_2249 0.28 -0.5
2,270,412 - EX28DRAFT_2249 0.28 +0.6
2,270,432 + EX28DRAFT_2249 0.31 -0.3
2,270,450 + EX28DRAFT_2249 0.33 +0.5
2,270,466 - EX28DRAFT_2249 0.35 +1.0
2,270,546 + EX28DRAFT_2249 0.45 +0.3
2,270,573 - EX28DRAFT_2249 0.48 +0.2
2,270,686 - EX28DRAFT_2249 0.63 -0.4
2,270,689 + EX28DRAFT_2249 0.63 +0.6
2,270,689 + EX28DRAFT_2249 0.63 -0.0
2,270,690 - EX28DRAFT_2249 0.63 -0.1
2,270,690 - EX28DRAFT_2249 0.63 +1.0
2,270,816 - EX28DRAFT_2249 0.79 -1.5
2,270,889 + EX28DRAFT_2249 0.88 +0.0
2,270,889 + EX28DRAFT_2249 0.88 +1.3
2,270,973 + -1.3
2,270,974 - -1.0
2,270,993 + -3.0
2,270,993 + -1.2
2,270,996 + -3.0
2,271,049 + EX28DRAFT_2250 0.11 -2.2
2,271,120 - EX28DRAFT_2250 0.25 -1.3
2,271,544 - -0.7

Or see this region's nucleotide sequence