Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1697 and EX28DRAFT_1698 are separated by 209 nucleotides EX28DRAFT_1698 and EX28DRAFT_1699 are separated by 166 nucleotides EX28DRAFT_1699 and EX28DRAFT_1700 are separated by 38 nucleotides
EX28DRAFT_1697: EX28DRAFT_1697 - Predicted permease, at 1,710,341 to 1,711,456
_1697
EX28DRAFT_1698: EX28DRAFT_1698 - RNA, at 1,711,666 to 1,711,773
_1698
EX28DRAFT_1699: EX28DRAFT_1699 - hypothetical protein, at 1,711,940 to 1,712,092
_1699
EX28DRAFT_1700: EX28DRAFT_1700 - hypothetical protein, at 1,712,131 to 1,713,297
_1700
Position (kb) 1711
1712 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1710.710 kb on + strand, within EX28DRAFT_1697 at 1710.892 kb on - strand, within EX28DRAFT_1697 at 1711.082 kb on - strand, within EX28DRAFT_1697 at 1711.138 kb on + strand, within EX28DRAFT_1697 at 1711.203 kb on + strand, within EX28DRAFT_1697 at 1711.204 kb on - strand, within EX28DRAFT_1697 at 1711.581 kb on - strand at 1711.584 kb on - strand at 1711.660 kb on + strand at 1711.661 kb on - strand at 1711.661 kb on - strand at 1711.691 kb on + strand, within EX28DRAFT_1698 at 1711.692 kb on - strand, within EX28DRAFT_1698 at 1711.693 kb on + strand, within EX28DRAFT_1698 at 1711.820 kb on + strand at 1711.900 kb on - strand at 1711.999 kb on + strand, within EX28DRAFT_1699 at 1711.999 kb on + strand, within EX28DRAFT_1699 at 1712.000 kb on - strand, within EX28DRAFT_1699 at 1712.000 kb on - strand, within EX28DRAFT_1699 at 1712.122 kb on - strand at 1712.214 kb on - strand at 1712.530 kb on - strand, within EX28DRAFT_1700
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,710,710 + EX28DRAFT_1697 0.33 +0.8 1,710,892 - EX28DRAFT_1697 0.49 +0.4 1,711,082 - EX28DRAFT_1697 0.66 +2.3 1,711,138 + EX28DRAFT_1697 0.71 +0.4 1,711,203 + EX28DRAFT_1697 0.77 +1.9 1,711,204 - EX28DRAFT_1697 0.77 -3.8 1,711,581 - +1.1 1,711,584 - +0.1 1,711,660 + -2.2 1,711,661 - -0.9 1,711,661 - +1.7 1,711,691 + EX28DRAFT_1698 0.23 -0.6 1,711,692 - EX28DRAFT_1698 0.24 +0.6 1,711,693 + EX28DRAFT_1698 0.25 -0.2 1,711,820 + +0.1 1,711,900 - -0.4 1,711,999 + EX28DRAFT_1699 0.39 -0.0 1,711,999 + EX28DRAFT_1699 0.39 -0.2 1,712,000 - EX28DRAFT_1699 0.39 -1.3 1,712,000 - EX28DRAFT_1699 0.39 -0.9 1,712,122 - -0.4 1,712,214 - -0.6 1,712,530 - EX28DRAFT_1700 0.34 -0.4
Or see this region's nucleotide sequence