Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1323

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1321 and EX28DRAFT_1322 are separated by 11 nucleotidesEX28DRAFT_1322 and EX28DRAFT_1323 are separated by 11 nucleotidesEX28DRAFT_1323 and EX28DRAFT_1324 overlap by 4 nucleotidesEX28DRAFT_1324 and EX28DRAFT_1325 overlap by 4 nucleotides EX28DRAFT_1321: EX28DRAFT_1321 - hypothetical protein, at 1,321,194 to 1,321,859 _1321 EX28DRAFT_1322: EX28DRAFT_1322 - hypothetical protein, at 1,321,871 to 1,322,581 _1322 EX28DRAFT_1323: EX28DRAFT_1323 - Protein of unknown function (DUF1317), at 1,322,593 to 1,322,745 _1323 EX28DRAFT_1324: EX28DRAFT_1324 - Methyltransferase domain, at 1,322,742 to 1,323,224 _1324 EX28DRAFT_1325: EX28DRAFT_1325 - Transcriptional activator, adenine-specific DNA methyltransferase, at 1,323,221 to 1,323,880 _1325 Position (kb) 1322 1323Strain fitness (log2 ratio) -2 -1 0 1at 1321.594 kb on - strand, within EX28DRAFT_1321at 1321.857 kb on + strandat 1321.857 kb on + strandat 1321.858 kb on - strandat 1321.892 kb on - strandat 1321.965 kb on - strand, within EX28DRAFT_1322at 1321.965 kb on - strand, within EX28DRAFT_1322at 1321.991 kb on + strand, within EX28DRAFT_1322at 1321.991 kb on + strand, within EX28DRAFT_1322at 1321.992 kb on - strand, within EX28DRAFT_1322at 1322.222 kb on - strand, within EX28DRAFT_1322at 1322.282 kb on + strand, within EX28DRAFT_1322at 1322.282 kb on + strand, within EX28DRAFT_1322at 1322.330 kb on + strand, within EX28DRAFT_1322at 1322.331 kb on - strand, within EX28DRAFT_1322at 1322.332 kb on + strand, within EX28DRAFT_1322at 1322.474 kb on - strand, within EX28DRAFT_1322at 1322.569 kb on + strandat 1322.592 kb on + strandat 1322.593 kb on - strandat 1322.649 kb on + strand, within EX28DRAFT_1323at 1322.875 kb on + strand, within EX28DRAFT_1324at 1322.888 kb on + strand, within EX28DRAFT_1324at 1322.889 kb on - strand, within EX28DRAFT_1324at 1322.890 kb on + strand, within EX28DRAFT_1324at 1323.125 kb on + strand, within EX28DRAFT_1324at 1323.158 kb on - strand, within EX28DRAFT_1324at 1323.241 kb on + strandat 1323.241 kb on + strandat 1323.245 kb on + strandat 1323.246 kb on - strandat 1323.267 kb on - strandat 1323.386 kb on + strand, within EX28DRAFT_1325at 1323.665 kb on - strand, within EX28DRAFT_1325at 1323.672 kb on + strand, within EX28DRAFT_1325at 1323.676 kb on - strand, within EX28DRAFT_1325at 1323.676 kb on - strand, within EX28DRAFT_1325at 1323.676 kb on - strand, within EX28DRAFT_1325at 1323.676 kb on - strand, within EX28DRAFT_1325at 1323.677 kb on + strand, within EX28DRAFT_1325at 1323.678 kb on - strand, within EX28DRAFT_1325at 1323.678 kb on - strand, within EX28DRAFT_1325at 1323.678 kb on - strand, within EX28DRAFT_1325

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,321,594 - EX28DRAFT_1321 0.60 +1.7
1,321,857 + +0.5
1,321,857 + +0.1
1,321,858 - -0.6
1,321,892 - -0.9
1,321,965 - EX28DRAFT_1322 0.13 +0.7
1,321,965 - EX28DRAFT_1322 0.13 -0.5
1,321,991 + EX28DRAFT_1322 0.17 +0.4
1,321,991 + EX28DRAFT_1322 0.17 -0.1
1,321,992 - EX28DRAFT_1322 0.17 -1.1
1,322,222 - EX28DRAFT_1322 0.49 -2.7
1,322,282 + EX28DRAFT_1322 0.58 -0.2
1,322,282 + EX28DRAFT_1322 0.58 -0.5
1,322,330 + EX28DRAFT_1322 0.65 +1.0
1,322,331 - EX28DRAFT_1322 0.65 -2.3
1,322,332 + EX28DRAFT_1322 0.65 +1.6
1,322,474 - EX28DRAFT_1322 0.85 +0.5
1,322,569 + +0.7
1,322,592 + -2.3
1,322,593 - +0.8
1,322,649 + EX28DRAFT_1323 0.37 +0.5
1,322,875 + EX28DRAFT_1324 0.28 +1.5
1,322,888 + EX28DRAFT_1324 0.30 +0.2
1,322,889 - EX28DRAFT_1324 0.30 -0.6
1,322,890 + EX28DRAFT_1324 0.31 -0.3
1,323,125 + EX28DRAFT_1324 0.79 -0.8
1,323,158 - EX28DRAFT_1324 0.86 +0.4
1,323,241 + +1.2
1,323,241 + +0.1
1,323,245 + -1.0
1,323,246 - -1.5
1,323,267 - -0.8
1,323,386 + EX28DRAFT_1325 0.25 -1.4
1,323,665 - EX28DRAFT_1325 0.67 -0.5
1,323,672 + EX28DRAFT_1325 0.68 +0.1
1,323,676 - EX28DRAFT_1325 0.69 +0.6
1,323,676 - EX28DRAFT_1325 0.69 -1.3
1,323,676 - EX28DRAFT_1325 0.69 -1.8
1,323,676 - EX28DRAFT_1325 0.69 -1.5
1,323,677 + EX28DRAFT_1325 0.69 +0.3
1,323,678 - EX28DRAFT_1325 0.69 +0.7
1,323,678 - EX28DRAFT_1325 0.69 +0.3
1,323,678 - EX28DRAFT_1325 0.69 -0.8

Or see this region's nucleotide sequence